Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00520 ATGGAACACGCTAACATACAGATAAGAGTGTTGACTGGGGTGTGTACCATTGACTCTTTGTTTATAAGTAGCGGCACATTGCATGAACAACATGCAAGCTTTCTCTTACGTTGCAATTCAATATTGTGTGAACAATTCAGTATGATGTTCATATTTCCAACGCTTCTGTCCATGAAGTTCCAACCCTTTTGGTTGATTCTTCTAATGTTCTTTTGTGCATTTCCCCATTCTCATGCTTTCAATTCTTCTGGAATTGCTTCAGAAGCAAATGCTCTGCTGAAGTGGAAAGCCAGCCTTGACAAGCAGAGTCAAGCTTCTCTCTCTTCATGGACTGCCAACACTTCTTGCAATTGGCTTGGAATTGCATGTGATCACTCCAATCATGTCTCCCAAATAAATCTTCCAAATATTGGATTGAGAGGTACGCTTGAAAATCTCAACTTCTCAATGCTTACAAACATTCACACTCTAAATTTGAGAAACAACTTTTTGAATGGAAGTATTCCTCCTCAAATTGGAGTTCTGTCCAATCTAGTTGTTCTTGATTTGTCTGCTAATAAACTTTCTGAGATTATCCCTTCTGAAATAACACAGTTGATTAGCCTTCAGAAGTTGAACATGAGTTATAATACTTTCAGTGAGTCCCTTCCCCAAGAAATAGGGAGATTGAGGGAGCTGAGAACACTTCATGTTCCTTGGTGCAATCTCATAGGAGCAATCCCAATCTCTATAGAAAAGTTGAACAATTTGATTCATCTAGATGTAGGAGGCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCAAATGGACCTAAACTATTTGTCATTTGGAGCTAATAAATTCCATGGCTCCATTCCCAAAGAAATTGTGAATATGAGGAACCTAGAGATTCTATATCTTGGGGATAGTGGCCTTTCTGGCACCATGCCCCAAGAAATTTACATGCTGGGGAAACTAGTATATCTCGACATAGGCCATTGTAATCTTTCTGGTCACATTCATCGTGAAATTGGTAACTTGATCAATCTAACTAGTCTTAACCTTTATGGAAACCAATTTTTAGGCTTTATTCCTCCTGAAATTGGATTTTTGAGAAAACTCGGTGAACTTGATTTGTCTCGGAATTTTCTCTCTGGTAAAATCCCTTCCACAATTGGAAACTTGAGCAATCTAAACTTTCTTTACCTTTATGACAACCAATTATCTGGCTTTATCCCGAATGAAATAGGAAATTTGCATTCCCTTCTAACAATCCAGTTGATGCGCAATAATCTCTCTGGACCAATCCCTACTTTCATAGGTAACCTGGTCAATTTAGAAACCATTTTTTTTTCTCAAAATAATCTCTTTGGACCAATCCCTATTTCCATAGGTAACTTAGTCAATTTGGAAACCATTGATCTTAGTCAAAACAAACTTTCTGGATCCATTCCTTCCATTATTGGAAATTTGTCAAAGCTTCGTGAATTAAGTTTACTTGGCAATAATCTCAGTGGCAAGATTCCAACAGAAATGAACAGGATTATTGCATTGGAAAATTTGCAGCTAGCTGATAATAATTTTGTTGGCCATTTACCTCACAACATTTGTGTTGGTGGAAAGTTGGCAAAATTTTCCGCTAGCAATAACCATTTCACTGGCCATATTCCAGAGAGTTTGAAGAATTGCTCTACCCTTATACGAGTGAGACTTCAGGAAAATCAACTAACTGGAAACATAACAGATGCTTTTGGTGTACTTCCAAACTTGGATTACATCGAATTGAGTGAAAACAATTTTTATGGTCATCTTTCACCAAATTGGGGAAAGTTCCGCAGTCTCACAAGCCTCAAGATCTCTAATAATAACTTATCAGGTGTTATCCCACCAGAGCTAGGCGGGGCAACCAAATTACAAGCACTTCATTTATCCTCAAATCATCTTACAGGAAACATTCCACGAGATTTATGTAATTTGGTCTTGTTGTATGATCTATCACTCAACAACAATAATCTTTCAGGAAATATTCCCTCAAAAATTGCATCAATGAAGAATCTTCAAATTTTGAGGCTTGGATCTAATAATTTGTCTGGGTTAATTCCAGACCAACTTGGCAATTTGCTCAGTTTATTGGAAATGAATTTGAGTCAGAACAAATTTGAGGGAAATATTCCCTTAGAGCTTGGCAAATTAATATCTCTTACAACTCTTGATCTCAGTGAAAATTTGTTGAGAGGAAGATTAACACATGTGCTTGGAGGATTACAAAAATTAGAAACATTGAATCTCTCTCACAATAGTCTCTCAGGTGATCTTTCTAGCTTTGATGAAATGATGAGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCCACTTCCAAACATTCCAGTCTTTCGCAATGCTACAATGGAAGCTGTAAGAAATAATAAAGGCTTGTGTGGCCATATTAGTGGCTTGGAGCCTTGCCCAACATCAGGTCGAAAGTCGCATAATCAAATGACAAAGAAAGTCATAATACTGGTTTTACCCCTTACTTTGGGCGGTCTATTACTGGCGTTATTTATTTTTGGAGTCTTTTATTATTTATGCAAAACTTCAGTGAAACGGGAAGATCAAGCTACCAATTTGCAAACTGCAAACACATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTCGAGAATATTGTTGAAGCCACTGAAAATTTTGACGATAAGCATCTCATTGGAGTTGGAGGACAGGGACAAGTTTACAAAGCAATGTTGCCCTCAGGTCAAATTGTGGCTGTAAAGAAACTGCATTTAGTTCCAAATGAAGAAAAGCTCAGTGTGAAAGCTTTCAGAAGTGAGATCCAAGCTCTGACAGAAATTCGCCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCCCAATGGTCATTTATGGTGTGTGAATTCTTGGAGAAGGGCAATGTCCAGAATACTTTGAAGGATGATGAAGAAGCAATTGCATTTGATTGGAATAAGAGAGTGAATGTTATTAAAGATGTAGCAAATGCTTTATTGTACATGCACCATGATTGCTCACCGCCAATTATTCATCGTGATATATCAAGTAAAAATGTGCTTTTGGATTTGGAATATGTGGCACATGTCTCAGATTTTGGAACAGCTAAGTTTCTTAATCCCAATTCATCCAATTGGACCTCATTTGTAGGAACCTTCGGATATGCCGCTCCAGAACTTGCATACACAATGGAAGTGAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGGGAAATACTTCTTGGAAAGCATCCTGGTGATTTTATATCTTCCTTATTATCATCTTCATTCAATGGTGATCATATGACATTGATGGATAAGTTGGAGCAGCGTCTCCCTCCTCCAACTAAACGTTTACTTAAAGAGGTGGCATCAGTTGCAAAGATAGCACTTGCTTGCATGATTGAAAATCCACGATCTCGCCCTACTATGAAGGAGGTTGTCAATGAGCTTGTACTGTAA 3516 0.3766 MEHANIQIRVLTGVCTIDSLFISSGTLHEQHASFLLRCNSILCEQFSMMFIFPTLLSMKFQPFWLILLMFFCAFPHSHAFNSSGIASEANALLKWKASLDKQSQASLSSWTANTSCNWLGIACDHSNHVSQINLPNIGLRGTLENLNFSMLTNIHTLNLRNNFLNGSIPPQIGVLSNLVVLDLSANKLSEIIPSEITQLISLQKLNMSYNTFSESLPQEIGRLRELRTLHVPWCNLIGAIPISIEKLNNLIHLDVGGNNLSGSIPQRIWQMDLNYLSFGANKFHGSIPKEIVNMRNLEILYLGDSGLSGTMPQEIYMLGKLVYLDIGHCNLSGHIHREIGNLINLTSLNLYGNQFLGFIPPEIGFLRKLGELDLSRNFLSGKIPSTIGNLSNLNFLYLYDNQLSGFIPNEIGNLHSLLTIQLMRNNLSGPIPTFIGNLVNLETIFFSQNNLFGPIPISIGNLVNLETIDLSQNKLSGSIPSIIGNLSKLRELSLLGNNLSGKIPTEMNRIIALENLQLADNNFVGHLPHNICVGGKLAKFSASNNHFTGHIPESLKNCSTLIRVRLQENQLTGNITDAFGVLPNLDYIELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPPELGGATKLQALHLSSNHLTGNIPRDLCNLVLLYDLSLNNNNLSGNIPSKIASMKNLQILRLGSNNLSGLIPDQLGNLLSLLEMNLSQNKFEGNIPLELGKLISLTTLDLSENLLRGRLTHVLGGLQKLETLNLSHNSLSGDLSSFDEMMSLTSIDISYNEFEGPLPNIPVFRNATMEAVRNNKGLCGHISGLEPCPTSGRKSHNQMTKKVIILVLPLTLGGLLLALFIFGVFYYLCKTSVKREDQATNLQTANTFAIWSFDGKMVFENIVEATENFDDKHLIGVGGQGQVYKAMLPSGQIVAVKKLHLVPNEEKLSVKAFRSEIQALTEIRHRNIVKLYGFCSHSQWSFMVCEFLEKGNVQNTLKDDEEAIAFDWNKRVNVIKDVANALLYMHHDCSPPIIHRDISSKNVLLDLEYVAHVSDFGTAKFLNPNSSNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLAWEILLGKHPGDFISSLLSSSFNGDHMTLMDKLEQRLPPPTKRLLKEVASVAKIALACMIENPRSRPTMKEVVNELVL 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00520 1171 ProSiteProfiles Leucine-rich repeat profile. 464 486 IPR001611 GO:0005515
Vimu3g00520 1171 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1025 1037 IPR008266 GO:0004672|GO:0006468
Vimu3g00520 1171 Pfam Protein kinase domain 902 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00520 1171 ProSiteProfiles Protein kinase domain profile. 901 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00520 1171 Pfam Leucine Rich Repeat 632 654 IPR001611 GO:0005515
Vimu3g00520 1171 Pfam Leucine Rich Repeat 369 390 IPR001611 GO:0005515
Vimu3g00520 1171 Pfam Leucine Rich Repeat 344 366 IPR001611 GO:0005515
Vimu3g00520 1171 SUPERFAMILY RNI-like 157 525 - -
Vimu3g00520 1171 SMART LRR_sd22_2 390 416 - -
Vimu3g00520 1171 SMART LRR_sd22_2 462 488 - -
Vimu3g00520 1171 SMART LRR_sd22_2 726 752 - -
Vimu3g00520 1171 SMART LRR_sd22_2 175 204 - -
Vimu3g00520 1171 SUPERFAMILY Protein kinase-like (PK-like) 885 1169 IPR011009 -
Vimu3g00520 1171 FunFam MDIS1-interacting receptor like kinase 2 980 1171 - -
Vimu3g00520 1171 SUPERFAMILY L domain-like 540 812 - -
Vimu3g00520 1171 SMART LRR_typ_2 390 414 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 199 223 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 750 772 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 678 701 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 631 654 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 726 749 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 606 630 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 175 198 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 247 271 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 342 366 IPR003591 -
Vimu3g00520 1171 SMART LRR_typ_2 462 486 IPR003591 -
Vimu3g00520 1171 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 268 533 - -
Vimu3g00520 1171 Gene3D Transferase(Phosphotransferase) domain 1 980 1171 - -
Vimu3g00520 1171 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Vimu3g00520 1171 Gene3D Phosphorylase Kinase; domain 1 861 979 - -
Vimu3g00520 1171 ProSiteProfiles Leucine-rich repeat profile. 752 774 IPR001611 GO:0005515
Vimu3g00520 1171 Pfam Leucine rich repeat 176 236 IPR001611 GO:0005515
Vimu3g00520 1171 Pfam Leucine rich repeat 728 785 IPR001611 GO:0005515
Vimu3g00520 1171 FunFam Leucine-rich repeat receptor protein kinase MSP1 864 979 - -
Vimu3g00520 1171 PANTHER LEUCINE RICH REPEAT KINASE 2 424 1169 - -
Vimu3g00520 1171 FunFam Uncharacterized protein 534 829 - -
Vimu3g00520 1171 Gene3D Ribonuclease Inhibitor 87 199 IPR032675 -
Vimu3g00520 1171 Gene3D Ribonuclease Inhibitor 200 272 IPR032675 -
Vimu3g00520 1171 Gene3D Ribonuclease Inhibitor 273 508 IPR032675 -
Vimu3g00520 1171 PRINTS Leucine-rich repeat signature 750 763 - -
Vimu3g00520 1171 PRINTS Leucine-rich repeat signature 465 478 - -
Vimu3g00520 1171 FunFam Nuclear pore complex protein NUP107 85 242 - -
Vimu3g00520 1171 Pfam Leucine rich repeat N-terminal domain 86 124 IPR013210 -
Vimu3g00520 1171 Gene3D Ribonuclease Inhibitor 509 823 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00520 Vimu-Chr3 5078764 5082400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00520 77 718 Receptor kinase-like Gene Family AT4G08850 35.185 3.53e-98 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g00520 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00520 - - vun:114189705 1635.93