Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00502 ATGTCCCTCGAAGACTCCCTAAGATCTCTCTCTCTCGACTACCTCAACCTTCTCATCAATGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTTGAGGGTCGTCTCGTCCACGCCCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGCAAATTCTTCTGCGGCCCCGACCCTCCACCCGGCCTAGACTCCGCCGCCGCTTCGCGAGCCGGCGCCGCCTCCGCTGCGCGTCCCCCCGGCGTGATCCCGGTGAACTCCGTCGGGTACGAGGTTTTCCTGTTGCTGCTGCAGTTCCTGTACAGTGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCCAGACCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTCGACACCCTTGCCGCCGCCAGATACTTCGGCGTTGAACAACTTGCATTGCTCACTCAGTTACTGCGTCTGCTCTTTGGAAACTGGGAAGGGGTTAATTCATTGCATGGTGTTTTTTGTTTGAGGATGCGAAAATATTTTGGGAAAACTAAGAAACAACTTGCGAGCATGGTGGAGAAAGCTTCAATCGACGATGTGATGAAAGTGTTGATAGCATCTCGAAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCAAAGTCAGGACTTCCGCCGGAGGTGCTGGCCAAGCACCTACCCATCGACGTGGTGGCCAAGATCGAGGAGCTCCGCCTCAAATCCTCCCTCGCGCGCCGCTCCATGCTGCCGCTCCGCCACCCGCACCCAGACCTCGGCGCGGCGGACATGGAGGATCAGAAAATCCGGCGGATGCGGCGCGCGCTCGACTCCTCCGACGTGGAACTCGTGAAGCTCATGGTGATGGGGGAGGGCCTGAACCTGGACGAGGCGCTGGCGTTGCACTACGCCGTGGAGAGTTGCAGCAGGGAGGTGGTGAAGGCGCTGCTGGAGCTGGGCGCGGCGGACGTGAATTTCCCGGCCGGGCCGGCCGGGAAGACTCCTCTTCACGTGGCGGCGGAGATGGTATCCCCAGAGATGGTGGCGGTGTTGCTGGACCACCACGCTGACCCGAACGTGAGAACCGTGGATGGCGTGACCCCGTTGGACATCCTGAGAACCCTAACCTCGGACTTCCTCTTCAAAGGGGCGGTCCCCGGACTCACCCACATTGAACCCAACAAGCTGAGGCTCTGCTTGGAGCTGGTGCAATCTGCAGCTCTCGTTTTGTCTCGTGAAGAAGGGAACAACCACAACAACAACGCTAACAACAGCAGCAACGACAACACTAACAACCCCAACACTTCTGCTTCTGCAACTGCTATCTATCCACCAATGAGTGAAGCGCACAGCAGCAGCAATTTGGACTCGAGACTGGTGTATCTCAACCTCGGCGCCACGCCACAAATAGGTGACGATGATAGCAGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGCGGATGCTTTTCAAATGGTAGCAATGTGAAGTGCGGTTTCATGGGAGATGAGGATAAGCGACAAGGAGAATCTAATCACTGA 1584 0.584 MSLEDSLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGLDSAAASRAGAASAARPPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQLLRLLFGNWEGVNSLHGVFCLRMRKYFGKTKKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSMLPLRHPHPDLGAADMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVESCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNHNNNANNSSNDNTNNPNTSASATAIYPPMSEAHSSSNLDSRLVYLNLGATPQIGDDDSSSQREAMNRHGSQGGGCFSNGSNVKCGFMGDEDKRQGESNH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00502 527 ProSiteProfiles Ankyrin repeat profile. 342 374 IPR002110 GO:0005515
Vimu3g00502 527 ProSiteProfiles Ankyrin repeat region circular profile. 342 372 - -
Vimu3g00502 527 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 185 490 IPR044284 GO:0099402
Vimu3g00502 527 MobiDBLite consensus disorder prediction 480 506 - -
Vimu3g00502 527 SUPERFAMILY POZ domain 8 153 IPR011333 -
Vimu3g00502 527 SUPERFAMILY Ankyrin repeat 301 385 IPR036770 -
Vimu3g00502 527 Pfam Domain of unknown function (DUF3420) 228 284 IPR024228 -
Vimu3g00502 527 FunFam regulatory protein NPR5 isoform X1 4 163 - -
Vimu3g00502 527 MobiDBLite consensus disorder prediction 426 451 - -
Vimu3g00502 527 Gene3D Potassium Channel Kv1.1; Chain A 3 157 IPR011333 -
Vimu3g00502 527 SMART ANK_2a 342 371 IPR002110 GO:0005515
Vimu3g00502 527 SMART ANK_2a 307 337 IPR002110 GO:0005515
Vimu3g00502 527 Gene3D - 274 390 IPR036770 -
Vimu3g00502 527 Pfam Ankyrin repeats (3 copies) 290 372 IPR002110 GO:0005515
Vimu3g00502 527 SMART BTB_4 25 162 IPR000210 GO:0005515
Vimu3g00502 527 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Vimu3g00502 527 FunFam regulatory protein NPR5 isoform X2 273 390 - -
Vimu3g00502 527 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00502 Vimu-Chr3 4845180 4850792 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu3g00502 BTB 6.7e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00502 K14508 - gmx:100811388 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00502 3 4845180 4850792 Vimu3g00502 3 4845180 4850792 ECH
Vimu6g03169 6 28108747 28111247 Vimu3g00502 3 4845180 4850792 PCT