Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00482 ATGGCGACTGAAACTGACTCAAGAGATAGCGCTCTCACTTTGCTCAAACAAGGAGCGGAGGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAGATGTGTTGTCAAGGAGCGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCTAAATTGACACTGAAGCGCTTAAATGCGGAGGCGAGGTGCGTGACCAAAGCAAGGAAACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGCGTTGCACACTTTAACGTTTGAGTATGTTGAGGGCCCTTCAGTCAAGGATGTATTTCTTGAATTTGGTTCTCGTGGCCTTGGTGAAGAGGGTCTGGACAACATTGCTACCCAAATTGGTCATGCAATTGGAAAACTGCATGATGGTGGTCTTGTTCATGGTGATTTAACAACATCAAACATGTTGCTCAAGAATGGTATCAATGAGTTGGTTCTTATTGATTTTGGTCTGAGCTTCACTTCAACTCTACCGGAAGATAAAGCAGTTGATTTGTATGTTCTGGAAAGAGCTATTCTGTCAATGCATTCTTCATGTGGGAATGTGATGGATCGGATACTTACTGCATACCGGAAGTCATCAAAACAGTGGTCATCCACATTGAACAAGTTGGCACAAGGTTAG 648 0.4398 MATETDSRDSALTLLKQGAEARVFESSFVGRRCVVKERFSKKYRHPTLDSKLTLKRLNAEARCVTKARKLGVCTPVLYAVDPALHTLTFEYVEGPSVKDVFLEFGSRGLGEEGLDNIATQIGHAIGKLHDGGLVHGDLTTSNMLLKNGINELVLIDFGLSFTSTLPEDKAVDLYVLERAILSMHSSCGNVMDRILTAYRKSSKQWSSTLNKLAQG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00482 215 Gene3D Transferase(Phosphotransferase) domain 1 109 215 - -
Vimu3g00482 215 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 5 214 IPR022495 GO:0004674
Vimu3g00482 215 NCBIfam KEOPS complex kinase/ATPase Bud32 18 212 IPR022495 GO:0004674
Vimu3g00482 215 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Vimu3g00482 215 ProSiteProfiles Protein kinase domain profile. 9 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00482 215 SMART serkin_6 9 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00482 215 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Vimu3g00482 215 FunFam Protein kinase superfamily protein 107 215 - -
Vimu3g00482 215 Pfam Protein kinase domain 46 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00482 215 SUPERFAMILY Protein kinase-like (PK-like) 12 174 IPR011009 -
Vimu3g00482 215 FunFam TP53-regulating kinase isoform X1 20 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00482 Vimu-Chr3 4651431 4653116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00482 14 160 MAP Kinase Kinase Kinase AT5G66710 26.667 3.49e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu3g00482 Pkinase 1.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00482 K08851 - gmx:100782376 367.081