Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00480 ATGCCCAAAATAAAAAAACATTCCACCTTGAAGGGGCACACAGAACGTGCTACAGATGTTGCTTTTTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGATCACTTTTGAAGACATTTGAGGGTCATCTGGACCGTCTTGCCCGCATTGCCATCCATCCATCAGGGAAGTACCTGGGAACTGCCAGTTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGGGAGGAGTTGCTTCTTCAAGAAGGACATAGTAGAAGTGTGTATGGCCTGGCTTTCCACCGAGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATTCTTGCACTGGAAGGTCATGTCAAACCGGTAGGAGATTAA 435 0.4598 MPKIKKHSTLKGHTERATDVAFSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAIHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHRDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVGD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00480 144 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 10 42 - -
Vimu3g00480 144 ProSiteProfiles Trp-Asp (WD) repeats profile. 93 134 IPR001680 GO:0005515
Vimu3g00480 144 SUPERFAMILY WD40 repeat-like 5 142 IPR036322 GO:0005515
Vimu3g00480 144 PANTHER WD40 REPEAT PROTEIN 1 142 - -
Vimu3g00480 144 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 88 - -
Vimu3g00480 144 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 92 IPR001680 GO:0005515
Vimu3g00480 144 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 93 130 - -
Vimu3g00480 144 ProSiteProfiles Trp-Asp (WD) repeats profile. 10 42 IPR001680 GO:0005515
Vimu3g00480 144 ProSitePatterns Trp-Asp (WD) repeats signature. 70 84 IPR019775 -
Vimu3g00480 144 Gene3D - 2 144 IPR015943 GO:0005515
Vimu3g00480 144 SMART WD40_4 86 125 IPR001680 GO:0005515
Vimu3g00480 144 SMART WD40_4 3 42 IPR001680 GO:0005515
Vimu3g00480 144 SMART WD40_4 44 83 IPR001680 GO:0005515
Vimu3g00480 144 Pfam WD domain, G-beta repeat 45 83 IPR001680 GO:0005515
Vimu3g00480 144 Pfam WD domain, G-beta repeat 8 42 IPR001680 GO:0005515
Vimu3g00480 144 Pfam WD domain, G-beta repeat 94 125 IPR001680 GO:0005515
Vimu3g00480 144 ProSitePatterns Trp-Asp (WD) repeats signature. 112 126 IPR019775 -
Vimu3g00480 144 PRINTS G protein beta WD-40 repeat signature 70 84 IPR020472 -
Vimu3g00480 144 PRINTS G protein beta WD-40 repeat signature 112 126 IPR020472 -
Vimu3g00480 144 PRINTS G protein beta WD-40 repeat signature 29 43 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00480 8 142 U-box Gene Family AT2G33340 31.206 4.22e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00480 K12662 - gmx:100788948 278.1