Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00473 ATGGCAAAGAGAAAGAGCTGGTTTGGATGGGTGAAAAGGCTATTCACTTCTGAGCCAAAGGACAACAAAAAGCCAAACAAATGGGGGTGGAGTTTTGGAAGGATCAAGCAGAGACAGTATCCTACAATTACAGCTCCAAATAAGACATTGATTGAAGCAAGTGCAGAACAGAGAAAACATGCTTTAACTGTGGCTATTGCAACTGCAGCAGCTGCTGAAGCTGCAGTTGCTGCTGCACACGCTGCTGCTGAGGTTGTCAAGCTCACAGGTGCTTCTCGTTCTTACTCATATCTTTCCAAGGGAGACAGAAGTTTAGCTGCCATCAAGATCCAAAGCGCATACCGTGCACATCTTGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTTATAAGACTGCAAGCCATAATTCGTGGACAAGCTGTGAGACGTCGAATGTCAAAAACTATACAGAATTTTCACTCCAAAGCAAGAAATCAGGTGGAAATTCTGGAAAGAAGTAGCCATATGGCTGAACATACCAAGCAAAATGCTAAGCAAAAGAAAAAGTTAGAAGATAAGGAACTGAAGTCTGAATGCGATAGTCAAAGAACATGGGATTGTAGCTTGCTCTCTAGAGAAGACATTGAAGCTATATGGTACAGAAAACAAGACGCCATGTTCAAAAGAGAGCGTATGAAACAGTACTCTTCTTCACAAAGGAAAATAAAGTTTGGAAGAGAGAGCTGTCGTACACTTGGAGAGTGGTTGCATAAAGAAACATGTGATTTGAATATGATGTATAAGCCAATAACTCTTCCTGCAAACTTGATGACAGCAAAACAAGAATGGCAAGAAGGATTGAGTCCACAGATATCAATTCCAAGGAAATCATTTTCTGTTGTAAAAAGAAGTTTAAATGGGGATGAGAGTTCAATGTCAAATTCTCCAGTATTTCCTACATACATGGCTGTTACTGAATCCAGCAAAGCAAAGATGAGATCTGTTAGCACACCAAAGCAAAGAACAGGAATTCTTGACATATGCTCCAATCACAATGAAGAAATTTCCTTTTACTCTTCTTGTTATGGTGAAACTAGCAGCACCAATCAAAGATGCTAA 1098 0.4026 MAKRKSWFGWVKRLFTSEPKDNKKPNKWGWSFGRIKQRQYPTITAPNKTLIEASAEQRKHALTVAIATAAAAEAAVAAAHAAAEVVKLTGASRSYSYLSKGDRSLAAIKIQSAYRAHLARKALRALKGVIRLQAIIRGQAVRRRMSKTIQNFHSKARNQVEILERSSHMAEHTKQNAKQKKKLEDKELKSECDSQRTWDCSLLSREDIEAIWYRKQDAMFKRERMKQYSSSQRKIKFGRESCRTLGEWLHKETCDLNMMYKPITLPANLMTAKQEWQEGLSPQISIPRKSFSVVKRSLNGDESSMSNSPVFPTYMAVTESSKAKMRSVSTPKQRTGILDICSNHNEEISFYSSCYGETSSTNQRC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00473 365 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
Vimu3g00473 365 SMART iq_5 102 124 IPR000048 GO:0005515
Vimu3g00473 365 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Vimu3g00473 365 PANTHER IQ-DOMAIN 5-RELATED 4 344 - -
Vimu3g00473 365 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Vimu3g00473 365 Pfam Protein of unknown function (DUF4005) 296 335 IPR025064 -
Vimu3g00473 365 Coils Coil 169 189 - -
Vimu3g00473 365 Gene3D - 102 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00473 Vimu-Chr3 4592736 4596041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00473 1 362 IQD Protein Family AT5G03960 43.401 1.11e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00473 - - gmx:100800767 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00473 3 4592736 4596041 Vimu3g00473 3 4592736 4596041 ECH