Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00472 ATGGGAGAAGAAGTGAAGCTGATTGCTACCCATCAAAGCTTCCCCTGTGCAAGGATTGAGTGGGCATTAAGGATAAAGGGTGTGGAATATGAATACTTGAAAGAAGATTTGACAAATAAGAGTCCTTTGCTTCTTCAATCTAACCCTGTTCATAAGAAAGTTCCAGTCTTTCTTCACAATCACAAAGCAATTGCTGAATCACTTGTCATCCTTGAATACATAGATGAGACCTGGAAGAACAACCCTCTGCTACCTCTTGATCCTTATCAGAGAGCACATGCTCGCTTCTGGGCAAGGTTTATTGATGAGAAGTGTTTGTATGGTGTGTGGGGAGCAGCTGTGGCTGAAGGAGAAGAGAAGGAAAAGGCTGTGGAAGGTGCATTGGAGTCACTGAAATTTCTTGAGAAAGAAATTGAAGGGAAAAAGTATTTTGGAGGAGAGAAGATTGGCTATCTTGATATAGCAGCTGGATGGTTGTCTCATTGGCTCAGTGTTCTTGAAGAGCTTGGAGAGATGGAACTTCTCAATGCAGAGAGATTCCCTTCTCTTCATCAATGGACTCAAAACTTCATTCAGACTTCACCTATCAAAGATTGCATTCCATCTAGACAAAGTGTTATTGAATATTTCAGCTTTGGCATCAACTACACTCGTTCCTTGGCATCAAATAAATCTTCTTAG 681 0.4112 MGEEVKLIATHQSFPCARIEWALRIKGVEYEYLKEDLTNKSPLLLQSNPVHKKVPVFLHNHKAIAESLVILEYIDETWKNNPLLPLDPYQRAHARFWARFIDEKCLYGVWGAAVAEGEEKEKAVEGALESLKFLEKEIEGKKYFGGEKIGYLDIAAGWLSHWLSVLEELGEMELLNAERFPSLHQWTQNFIQTSPIKDCIPSRQSVIEYFSFGINYTRSLASNKSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00472 226 CDD GST_C_Tau 88 212 IPR045074 GO:0004364|GO:0006749
Vimu3g00472 226 FunFam Tau class glutathione S-transferase 1 86 - -
Vimu3g00472 226 Coils Coil 117 137 - -
Vimu3g00472 226 FunFam Tau class glutathione S-transferase 84 219 - -
Vimu3g00472 226 Pfam Glutathione S-transferase, C-terminal domain 116 192 IPR004046 -
Vimu3g00472 226 Gene3D - 84 219 - -
Vimu3g00472 226 CDD GST_N_Tau 5 78 - -
Vimu3g00472 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 12 207 IPR045073 -
Vimu3g00472 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vimu3g00472 226 SFLD Main.3: Omega- and Tau-like 2 211 IPR045073 -
Vimu3g00472 226 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Vimu3g00472 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 209 IPR010987 -
Vimu3g00472 226 Pfam Glutathione S-transferase, N-terminal domain 17 76 IPR004045 -
Vimu3g00472 226 SFLD Main (cytGST) 2 211 - -
Vimu3g00472 226 Gene3D Glutaredoxin 1 83 - -
Vimu3g00472 226 SUPERFAMILY GST C-terminal domain-like 76 212 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00472 Vimu-Chr3 4579770 4581035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00472 2 210 Glutathione S-transferase Gene Family AT2G29420 47.368 1.48e-70 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00472 K00799 - gmx:547587 375.941