Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00469 ATGGCCGAATCACTTCTTTTCAGCTTCGCAGAATTGCTCATTGGGAAGCTTGCCACTGCTGCCGTTCAAGAAGCTTCTTTGGCGTTTGGTGTACATAGCGAGCTACAGCAGATGAAAGCAACTATGGCACTCATCAAAGGTGTGCTTTTAGATGTTGAGAATTCGCAGAGCAATGCGCTGAGAGAATGGCTGGAACAGGTCAAGCGCGTGTTTTATGATGCTGAAGACATAGTCGATGATTTTGAGTGCGAAGCATTAAGGAAGCATGTTGTCAACACTTACGGTAGCTTCTCAAGAAAGGTACGCCGTTTTTTCTCGAAAAATAATCCTGTTGTTTATCGTCTTAGAATGGCGCATCACATTCAAGACATCAACACCAGGTTGGCCAGACTTGCAGCTGATAGGAACATGTTTGGCCTTCAAATCATTGACCATGATACACGTGTTGTCCACGTGAGGGAAATGACTCATTCTCATGTAAACCCTTCCGATGTTACAGGAAGGGAGCATGATAAGAATAAAATAGTTAACCTTTTGGTGCAAGATGGTGATTGCCAAAGTCTTTCTGTTATTTCCATTGTGGGAATGGGAGGCTTGGGAAAAACCACACTTGCTAAGTTGGTCTTCAATGACACAAAAATTGATGAATGTTTTCAGTTGAAGATGTGGGTCTGTGTCTCTAATGATTTTGAACTTAGGAATGTGCTCATTAAAATCCTCAATTCTGCTCCAAACTCAACTCCAAAAAACTTCAAGAACTTTGAGACGGAGAAACTTCAAAACCTTCTGAGAAAAAAACTTGAAGGTAAGAAGTTCTTGCTTATGTTGGATGACGTATGGAACGAGGATCCTGCACGATGGCATGAGTTGAAGGAAATAATAGATGTGGGTGTTAAAGGGAGTAAAGTCCTAGTGACCACTCGTAACCATGCAGTAGCTGTCATAATGCGCACTAAATCATCAAATTTGTACCTTCTTGGATGTCTTTCTGAGAAGGATTCTCTTTCACTATTTGTGAAATTTGCTTTTGATGATGGAGAAGAAAAAAAACATCCAGAACTATTGGAGATTGGAAAAGAAATCATGGAAAAATGTGATGGGTTACCTTTAGCAGTGAAAACAGTTGGGAGTTCATTGTTCTCAAGGTATGATAAGAAAGAGTGGGAGTCTATAAGAGACAGTGAGATTTGGAATTTAAAACAAAATGAAGAAGGCATTTTGCCTGCTCTCAAACTAAGCTACGATCAACTCCCTTCATATTTAAAACCTTGTTTTGCTTCTTTCTCCCTTTACCCAAAGGATGTTGCTATTCATTGTTCTCATATTTCTAGCATGTGGGAAGCACTTGGATTTCTTCCGCCCCCAGAGGAAAATGAATCAATGATGGATGTTGCCAATCATCTTTTGCATGAGCTATGGTCAAGATCTTTTCTTTCAGATTATCTTGACTTGGGAAGCGATTCCTCATTTCGGTTACATGATTTGGTGCATGATCTTGCAACTTATATTGCAAAGGGTGAGTTTGAGAGAATTTATCTCCACAATGAAAATATTTCTGAGAATGCCCGACATTTAACCATTATGGAAAAAAATTTGGTTGCTCAAGCTTTTCTTCACACAGGTTTAAGAAGTGTTAGTCTTCCCGAAGGAATGAACAATGAAGCTTTATTGATTAAATTGGTGTCAAGATGCAAATACTTGAGGTTTTTAAATTTATGTTCAACTGAATTTAAGAGTTTGCCTTACTCTATTGGAAAGTTGAAACATTTAAGATATCTTAATCTCCAGTATAGTGTAAAACTCAGGAGACTTCCTGATTCAGTATGCGAACTTCAAAATTTGCAAACTTTGATTCTCTTAGGATTTGTAAAGCTCCAAGAACTACCCAAAGGAATAAGAAATTTAATCAGCCTTCGGAGTCTTGTTATAACCACCAAACAAGTTGATTTTCCAGATAAAGACATTGCAGTTTTGACTTCTTTAGAAAATTTATATATTTGTAATTGTGATAATTTGGAGTCATTGTTCAATGGTATAGAACTATCCACTCTAAAAAAATTATCCTTATCTGAATGTGAAAATCTAAAGTCGGTGCCGTTTCACGCCATTAGAAATTTAAAGATTTTGGTTATCTCTGAGTGCCCCAAGTTAGAATTGTCAATGGGTGTTGGAAGCCAAATCCCCGATTCAAGGTTAAATCTTGTTATTCTTAAAGGCTTGACACAACTGGTGACATTACCTCAGTGGATTCAAGGATCTGCAAACTCTTTACAAAGCTTACTTATTATAGGTTGCATCAATCTTAAGGAGCTTTCCGATTGGCTAACAATTCTAATTTATCTCAAAGTTCTTGTTATTTCCAAATGTCCAAATTTGTTGTCAGTGCCTGACAACATGGATAAGCTCACAAATCTTGAAAAATTAGACATGACTGGTTGTCCTGAATTATGGAAAAGATTCGAGCCAGGAGTTGGACAGGATTGGCATAAGATATCACACATCAAACATGTTTACAATTTTGACGAAAAGGAAAACGAGAAAAAAGAATACAAAAAAGAGGATGAAGAAAAAAAACGAGGAAGAAAAAGACGAAGAAGAAGATGA 2604 0.3752 MAESLLFSFAELLIGKLATAAVQEASLAFGVHSELQQMKATMALIKGVLLDVENSQSNALREWLEQVKRVFYDAEDIVDDFECEALRKHVVNTYGSFSRKVRRFFSKNNPVVYRLRMAHHIQDINTRLARLAADRNMFGLQIIDHDTRVVHVREMTHSHVNPSDVTGREHDKNKIVNLLVQDGDCQSLSVISIVGMGGLGKTTLAKLVFNDTKIDECFQLKMWVCVSNDFELRNVLIKILNSAPNSTPKNFKNFETEKLQNLLRKKLEGKKFLLMLDDVWNEDPARWHELKEIIDVGVKGSKVLVTTRNHAVAVIMRTKSSNLYLLGCLSEKDSLSLFVKFAFDDGEEKKHPELLEIGKEIMEKCDGLPLAVKTVGSSLFSRYDKKEWESIRDSEIWNLKQNEEGILPALKLSYDQLPSYLKPCFASFSLYPKDVAIHCSHISSMWEALGFLPPPEENESMMDVANHLLHELWSRSFLSDYLDLGSDSSFRLHDLVHDLATYIAKGEFERIYLHNENISENARHLTIMEKNLVAQAFLHTGLRSVSLPEGMNNEALLIKLVSRCKYLRFLNLCSTEFKSLPYSIGKLKHLRYLNLQYSVKLRRLPDSVCELQNLQTLILLGFVKLQELPKGIRNLISLRSLVITTKQVDFPDKDIAVLTSLENLYICNCDNLESLFNGIELSTLKKLSLSECENLKSVPFHAIRNLKILVISECPKLELSMGVGSQIPDSRLNLVILKGLTQLVTLPQWIQGSANSLQSLLIIGCINLKELSDWLTILIYLKVLVISKCPNLLSVPDNMDKLTNLEKLDMTGCPELWKRFEPGVGQDWHKISHIKHVYNFDEKENEKKEYKKEDEEKKRGRKRRRRR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00469 867 PRINTS Disease resistance protein signature 190 205 - -
Vimu3g00469 867 PRINTS Disease resistance protein signature 266 280 - -
Vimu3g00469 867 PRINTS Disease resistance protein signature 679 695 - -
Vimu3g00469 867 PRINTS Disease resistance protein signature 365 379 - -
Vimu3g00469 867 Pfam NB-ARC domain 168 415 IPR002182 GO:0043531
Vimu3g00469 867 Gene3D - 11 122 - -
Vimu3g00469 867 CDD RX-CC_like 8 128 IPR038005 -
Vimu3g00469 867 FunFam Probable disease resistance protein At1g61300 147 321 - -
Vimu3g00469 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 426 IPR027417 -
Vimu3g00469 867 Gene3D Ribonuclease Inhibitor 514 729 IPR032675 -
Vimu3g00469 867 Coils Coil 840 863 - -
Vimu3g00469 867 SUPERFAMILY L domain-like 484 832 - -
Vimu3g00469 867 Gene3D Ribonuclease Inhibitor 730 846 IPR032675 -
Vimu3g00469 867 Gene3D - 148 323 IPR027417 -
Vimu3g00469 867 Gene3D - 328 418 IPR042197 -
Vimu3g00469 867 Gene3D - 420 501 IPR036388 -
Vimu3g00469 867 Pfam Rx N-terminal domain 11 96 IPR041118 -
Vimu3g00469 867 PANTHER DISEASE RESISTANCE PROTEIN RP 49 789 IPR044974 GO:0006952
Vimu3g00469 867 MobiDBLite consensus disorder prediction 845 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00469 Vimu-Chr3 4557195 4559798 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00469 188 816 WRKY Transcription Factor Family AT5G45050 24.247 9.93e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00469 - - vra:106771654 1128.62