Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00450 ATGGATAATCTCATGAATCTCAAGGATTTCGAATTGAATCCCAACGATCGCTCCATCGAAGGCCTCGCCAAATGGAGATCCGCCGTGTGGCTCGTCAAAAACCCTCGCAGGCGATTCCGTTGGGTTGCCGATCTCGCCAAACGCAAACACGCAGAGGAGAAGTGCCGCAAACTACAGGGAAAGCTTCGGGCCATTATCTATGCTGAAAGGGCAGCAATGCAGTTTATGGAAGCTATTGCTCCAGCTGAATACAAGGTGTCAGAAAAGACGAGAGAAGCTGGTTTTGGCATTGAACCAGATGATATTGCCTCACTGGTTCGAGGCCATGATTACAAGAGCTATAAAAGAATCGGTCAAGTTGAAGCAATTATAGAGAAACTCGGTGCCTCGGTTAATGACGGTGTTGGTAGCGGCAGTATAGATACCAGGCAGGAGATTTATGGAGTCAACCGTTATACTGAGAAACCTTCTAAAAGCTTCCTGATGTTTGTTTGGGAAGCACTGCATGACTTAACACTAATCATTCTCATGGTCTGTGCGGTAGTTTCTATAGCCATTGGGCTTCCCACCGAAGGATGGCCAAAAGGTGTTTATGATGGTCTGGGAATCATTCTTAGTATCTTCTTGGTAGTCAATGTTACTGCTATCAGTGACTATCAGCAATCCCTGCAGTTCAGGGATTTGGACAAGGAAAAGAAAAAGATCTTTGTTCAGGTTACAAGGAACAGAAAACGACAGAAGGTCTCAATTTATGATTTGGTTGTGGGAGATATTGTTCATTTGTCAACTGGTGATCAAGTTCCTGCTGATGGCATTTATATTTCAGGATATTCTTTGGTAATCGATGAGTCAAGTTTGACAGGTGAGAGCGAACCAGTAAATATAGATGAAAAAAGACCTTTTCTTCTTTCGGGAACCAAAGTTCAAGATGGTCAGGGGAAGATGATAGTTACGACTGTCGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTCTAAGCGAGGGTGGAGAGGATGAGACTCCACTACAGGTGAAATTAAATGGAGTTGCTACAGTTATTGGTAAAATTGGTTTGACTTTTTCTGTGCTGACATTTCTGGTGTTGACAATAAGGTTTGTGGTGGAAAAAGCAGTTACTGGTGATTTTTCCAGTTGGTCTTCAAATGATGCATTGAAGCTGCTGGACTACTTTGCTATTGCGGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTGCCATTAGCTGTAACACTTAGTCTTGCTTTTGCAATGAAAAAGCTGATGAAGGATAAGGCACTTGTGAGACATCTTTCTGCTTGTGAAACTATGGGTTCGGCAACTTGCATCTGCACAGACAAAACAGGAACATTGACCACTAACCACATGGTGGTTAATAAACTTTGGATATGTGGAAGGAGCACGGAGATTAAAGGCTATGAGAGCGTTGACAAACTGAAGACAGAGATACCTGAAGAAGTTTTAAGCATCCTTTTGCGAGCTATATTTCAAAATACTTCTTCTGAAGTAGTTAAGGACAAAGATGGAAATACAACAACATTGGGCACACCAACAGAATCGGCATTATTGGAATTTGGCTTGCTTTCAGGTGGCGATTTTGAAGCGCAGCGTGCAACATATAAGATACTTAAGGTTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTGCTAGTAGGTCTTCCTGATGGAGGTGTTCAAGCTTTCTGCAAAGGTGCTTCAGAAATAGTATTAAAATTGTGTAACAAAGTTATTGATCCTAGTGGAATAGTTGTTGATCTTTCTGATGAGCAGGCAAAGAACGTCTCTGACATTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTAGCTGTCAAAGATGTAAATGAATCCTCAGGGGAAACCAGCATCCCTGAAGATGGCTATACTCTGATAGGCATTGTGGGAATTAAGGATCCTGTGCGCCCTGGGGTTAGGGAAGCTGTTCAAACTTGCTTAGCTGCTGGAATAACTGTCCGCATGGTTACCGGTGATAACATAAATACAGCGAAAGCTATAGCTAAAGAATGTGGCATACTTACGGAGGGTGGTGTAGCTATAGAAGGACCCCAATTTCGTGACTTGTCACCAGAGCAAATGGAGAGTATTATACCAAGAATTCAGGTCGTTATGGCGCGATCCTTACCTCTTGACAAGCATACCTTAGTAACCCGTTTGAGGAATATGTTTCGTGAGGTTGTAGCTGTTACTGGCGATGGAACCAATGATGCTCCTGCACTGCATGAGTCGGACATTGGGCTTGCTATGGGCATAGCTGGAACTGAGGTTTGTGTCCCTGATATGTTTACTATGGTGAACCTGACGGTATTACATGTAGCAGTACATTATACTGTTTTTGGGTCGTTGCCGGTTGCCAAAGAAAATGCGGATGTCATTATAATGGATGATAACTTCACTACTATTGTCAATGTGGCCAGATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTACAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGTATCACAGGATCTGCTCCCCTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTGGGTGCATTGGCTTTGGCCACTGAACCTCCCAATGATGGACTTATGCTAAGACCCCCTGTGGGAAGGACAACAAGTTTTATTACCAAATCCATGTGGAGAAATATTTTTGGTCAAAGTATATATCAACTAATTGTTCTTGCGGTTCTCACTTTTGACGGGAAGAGACTACTGAGAATTAATGGTCCAGATTCAACTATAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTTTTCAATGAGATAAACAGCCGAGATATTGAAAAGATAAACATATTCAAGGGGATTTTTGAGAGCTGGATATTTTTTACGGTTATTTTGTCGACAGTGGTATTTCAAGTAGTGATAGTTGAGTTCCTGGGAACACTTGCCAGCACAGTGCCTCTAAGCTGGGAATTCTGGGTACTCAGTGTGGTAATTGGAGCAATTAGCTTACCCATAGCTGCTATACTTAAGTGCATCCCAGTTGACAAAGGAGATTCCACAAACCACCATGATGGTTATGAGGCACTGCCTTCTGGTCCCGAGCTCGCATAA 3195 0.4241 MDNLMNLKDFELNPNDRSIEGLAKWRSAVWLVKNPRRRFRWVADLAKRKHAEEKCRKLQGKLRAIIYAERAAMQFMEAIAPAEYKVSEKTREAGFGIEPDDIASLVRGHDYKSYKRIGQVEAIIEKLGASVNDGVGSGSIDTRQEIYGVNRYTEKPSKSFLMFVWEALHDLTLIILMVCAVVSIAIGLPTEGWPKGVYDGLGIILSIFLVVNVTAISDYQQSLQFRDLDKEKKKIFVQVTRNRKRQKVSIYDLVVGDIVHLSTGDQVPADGIYISGYSLVIDESSLTGESEPVNIDEKRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFSVLTFLVLTIRFVVEKAVTGDFSSWSSNDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVNKLWICGRSTEIKGYESVDKLKTEIPEEVLSILLRAIFQNTSSEVVKDKDGNTTTLGTPTESALLEFGLLSGGDFEAQRATYKILKVEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIVLKLCNKVIDPSGIVVDLSDEQAKNVSDIINGFASEALRTLCLAVKDVNESSGETSIPEDGYTLIGIVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINTAKAIAKECGILTEGGVAIEGPQFRDLSPEQMESIIPRIQVVMARSLPLDKHTLVTRLRNMFREVVAVTGDGTNDAPALHESDIGLAMGIAGTEVCVPDMFTMVNLTVLHVAVHYTVFGSLPVAKENADVIIMDDNFTTIVNVARWGRAIYINIQKFVQFQLTVNIVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMLRPPVGRTTSFITKSMWRNIFGQSIYQLIVLAVLTFDGKRLLRINGPDSTIVLNTLIFNSFVFCQVFNEINSRDIEKINIFKGIFESWIFFTVILSTVVFQVVIVEFLGTLASTVPLSWEFWVLSVVIGAISLPIAAILKCIPVDKGDSTNHHDGYEALPSGPELA 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00450 1064 SUPERFAMILY HAD-like 439 780 IPR036412 -
Vimu3g00450 1064 Pfam Cation transport ATPase (P-type) 507 591 - -
Vimu3g00450 1064 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Vimu3g00450 1064 Gene3D - 789 936 - -
Vimu3g00450 1064 Gene3D - 448 779 IPR023214 -
Vimu3g00450 1064 FunFam Calcium-transporting ATPase 461 656 - -
Vimu3g00450 1064 PANTHER CATION TRANSPORTING ATPASE 88 1042 - -
Vimu3g00450 1064 PRINTS Sodium/potassium-transporting ATPase signature 575 593 - -
Vimu3g00450 1064 PRINTS Sodium/potassium-transporting ATPase signature 444 465 - -
Vimu3g00450 1064 PRINTS Sodium/potassium-transporting ATPase signature 201 221 - -
Vimu3g00450 1064 Gene3D - 136 334 - -
Vimu3g00450 1064 NCBIfam HAD-IC family P-type ATPase 203 523 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu3g00450 1064 Gene3D - 941 1049 - -
Vimu3g00450 1064 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Vimu3g00450 1064 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Vimu3g00450 1064 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Vimu3g00450 1064 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Vimu3g00450 1064 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Vimu3g00450 1064 FunFam Calcium-transporting ATPase 17 77 - -
Vimu3g00450 1064 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Vimu3g00450 1064 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Vimu3g00450 1064 Pfam E1-E2 ATPase 236 430 - -
Vimu3g00450 1064 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 781 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu3g00450 1064 SFLD Haloacid Dehalogenase 433 834 - -
Vimu3g00450 1064 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Vimu3g00450 1064 Gene3D - 461 656 IPR023299 GO:0000166
Vimu3g00450 1064 FunFam copper-transporting ATPase 1 isoform X2 651 696 - -
Vimu3g00450 1064 FunFam Calcium-transporting ATPase 800 1044 - -
Vimu3g00450 1064 FunFam Calcium-transporting ATPase 210 334 - -
Vimu3g00450 1064 SMART Cation_ATPase_N_a_2 116 188 IPR004014 -
Vimu3g00450 1064 Gene3D - 17 78 - -
Vimu3g00450 1064 Pfam Cation transporting ATPase, C-terminus 866 1039 IPR006068 -
Vimu3g00450 1064 Pfam Cation transporter/ATPase, N-terminus 119 183 IPR004014 -
Vimu3g00450 1064 SFLD p-type atpase 433 834 IPR044492 -
Vimu3g00450 1064 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1042 IPR023298 -
Vimu3g00450 1064 CDD P-type_ATPase_Ca_PMCA-like 140 914 - -
Vimu3g00450 1064 Gene3D - 166 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00450 Vimu-Chr3 4415284 4423342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00450 61 1061 Primary Pumps ATPases AT3G57330 69.930 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00450 K01537 - gmx:100785768 1796.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00450 3 4415284 4423342 Vimu3g00450 3 4415284 4423342 ECH
Vimu6g03104 6 27369194 27381954 Vimu3g00450 3 4415284 4423342 PCT