Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00426 ATGGAGGAAGAAACTGAGAAAGGGTTGTTGTTGGAGTGTGTGAGAAAATTCTCAACAGCACCGTTTTTGTTGAAGACATATATGTTGGTTGAGGATCCTACGACCAATGATGTTGTGTCGTGGAATGATGACGGAACAACGTTTGTGGTGTTGCAACCTGCAGAGTTTGCTCGTAATCTTCTTCCCACTCTCTTCAACCATTGCAACTTCTCCAGCTTTGTTCGCCAGCTCAATACTTATGGTTTTCGTAAAGTTAGAAGAAGCAGATGGGAGTTTTGCAACGAGCGATTCAGAAAGGGAGAGAAAGAACTGTTATGGGAGATTAGACGTAAAAAATCATGTTTGAGGAAGAAGCAACATGGAGCACAAGAGTCAGATGAAGATCAAAGGTCCTTAACATCAAGCTTTTCTTCAAATTATGCAGTTCTTATGGATGAAAACAAGCGACTGAAGAAGGAGAACAAGGTGTTGCAGTCAGAGCTCACAACCATCAAGACCAAGTGCAGGGACTTGCTCGATTTGGTCACCAAATATTCATCTGCAAAGCCAGAACGACTGGAACAAGTCCAAGAACAAACATAG 582 0.4227 MEEETEKGLLLECVRKFSTAPFLLKTYMLVEDPTTNDVVSWNDDGTTFVVLQPAEFARNLLPTLFNHCNFSSFVRQLNTYGFRKVRRSRWEFCNERFRKGEKELLWEIRRKKSCLRKKQHGAQESDEDQRSLTSSFSSNYAVLMDENKRLKKENKVLQSELTTIKTKCRDLLDLVTKYSSAKPERLEQVQEQT 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00426 193 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 178 IPR027725 -
Vimu3g00426 193 Gene3D - 14 112 IPR036388 -
Vimu3g00426 193 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00426 193 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00426 193 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00426 193 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00426 193 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g00426 193 Coils Coil 140 167 - -
Vimu3g00426 193 FunFam Heat stress transcription factor B-4 14 112 - -
Vimu3g00426 193 SUPERFAMILY "Winged helix" DNA-binding domain 19 111 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00426 Vimu-Chr3 4184773 4187865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00426 20 178 HSF AT2G41690 55.307 2.72e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu3g00426 HSF_DNA-bind 4.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00426 K09419 - gmx:100802739 245.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00426 3 4184773 4187865 Vimu3g00426 3 4184773 4187865 ECH
Vimu6g03078 6 27121120 27122950 Vimu3g00426 3 4184773 4187865 PCT