Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00413 ATGCTGTTTTCAGTGATGAGAATTCTTTGCTTGTTGCCTTTTTTGCTCACTTTGTATCTGTCAAAATCTCTGCTTGTGGGTGGTGAGTTGCATGAACAAACTTTACTACCTTCCATCAACCAAAATCTCAGAGTTCCAGGCTGGAATGCCAGCACCTCAGATTACTGCTCCTTGAAAGGTGTCATCTGTGGCAACCTCTCACTGGTGGAGAAGCTCATTCTCTCTAATCAGAATCTTGGAGGCAATGTAAGTTCAATTTCCGGACTCAAAGCTTTGAAGTGGCTTGACCTTTCAAACAATAGCTTTCAAGGGATGATTCCAGCTGCTTTTGGAAATTTATCCCATCTTGAATATCTTGACTTGTCTTCAAACCAGTTTGAAGGTTCAATTCCACCACAATTGGGAGGCCTTAAAAGCCTCAAATCATTGAACTTTTCCAATAACATGCTGGTGGGAGAGATACCTAAGGAACTTCAAGGCCTTGAGAGTTTACAGGATTTTCAAATTTTCAACAATCATCTGAGTGGTTCCATACCCTCCTGGGTTGGGAACTGGACCAATCTGAGAGTTTTTGCTGCTTATGAGAATCATTTCAATGGAAGGATTCCAGATGCTCTGGGATTCATTTCTGAGCTTAAAACACTGAACCTGCACTCAAACCAGCTTGAAGGTCCTATACCAGGAAGCCTCTTTTCTGCATGGCAGCTAGAAGTTCTGATCCTCAGTCAGAACAACTTGAGTGGTGAAATTCCGGAGGAAATCGGGAACTGTCGAACTCTTCTCAGTGTTCGAATTGGCAAAAATAATCTACAAGGTAATATTCCTAAGAGTGTTGGAAACCTTACTAGCCTTGCTTACTTTGAAGCTGATGATAATAATCTTTCTGGTGAGTTAGTATCAGAGTTTTCTCTGTGTTATAATCTCACCTTCTTGAACTTGGCTTCAAATGGATTTACTGGAACAATTTCACCAGAATTTGGAAAGCTTATGAACCTGCAGGTGCTGATGCTTTCTGAAAATCACCTTTACGGTGATATTCCAGAATCGATTCTGCAGATCAAAAGTCTTACGATTCTTGACTTAAGCAATAACAGGTTCAATGGAACAATACCAAATGGAATCTGTGACATCGCTCAGTTGCAGAAGCTGCTGTTGGATCAGAATTTCATAAGAGGAGTGATCCCTCAGGAAATCGGAAGGTGTAGGGAACTTCTTGAATTGAAATTGGGGAGTAACAATCTGACAGGAACTATTCCCTCTCAGATTGGTGACATGCATAACTTGGAGATAGCCTTAAATTTGAGCTACAACCATCTTCAAGGACAATTGCCCCCAGAATTAGGAAGACTAGTCAAACTTGGCTCTCTGGATATTTCCAACAATAATCTCTCAGGTAATATCCCTGATACATTTACCGGGATGTTGGGCTTGATTGTCATTAACATGTCAAATAATCAGCTCACTGGTAAATTGCCAAAGTGTCCATCATTCCTGCATAATCCTGCTTCAAGTTATTTGGGCAACAGAGGGCTTTGCGGGGAGCCATTGAACATTACATGTGAAGATATTCCCTATAATTACATAGCTGTGGAAAACAGTAATAAATTTACTTACAAAACCATAATATATATATTTGGACCATTTCTTCTGGCTTTTATGTTTTTTGCTGTAGTTGCCTTTGTAAACAGAGTGTGTCAAAGGAAAGTAGCAAATGTTCCTGAGATAGAATGTGGTGAAATCATTAAGGAACCATCTATAATATCAGCAAATGTTTTTGCTGACAATCTAAGAGAAGAAGTAGACCTTGAAGCGGTTGCTAAAGCAACTCTTGAAGAATCTAATAAGCTTAGCAGTGGCACTTTCAGTGCAGTTTACAAGGCAGTGATGCCCTCTGGGGTACTCTTACTTGTAAGGAAAATAATCCCTATGGACATGACAGTAATGCAGCGCCAGAACAAGATCATTTCAGAGCTTGAAAGGCTTAGAAAAATTTCCCATGAACATGTAATGAAACCCGTTGGATACGTCATTTGTAGCGATGCTGCTCTTCTCGTTTATCAGTACATATCCTGTGGAACATTGGCTCAACTTCTTCATGACCCTGCAATGCAACCTGAATATCAGCTCGATTGGCCTGCTAGGTTCTCTATTGCAATGGGAATAGCAAAAGGTTTGTTTTTCCTTCATCACAGGGCAATCATCCACCTTGACATTTCTTCTAGCAATATTCTTCTAGATGCAAATTTAGGGCCACTGATTGGGGACATCGAAATATCAAAGTTCTTAGATCAAACTAAAGGAAGTGCTAGCATTGTCCCATATGCTGGTTCTTTTGGTTACGTTCCACCAGAATATGCATACACAATGCAAGTGACAGCAGCTGGAAATATTTATAGCTTTGGTGTGATACTGCTGGAGATTATAACTTCGAGAGAAGCATTTGATGAGGGTAATGGAGAAGGTGTAGACTTGGTGAAGTGGGTTCAAGAAGCTGAAGCAAGAGGTGAAACTCCAGAGCAGATATTGGATGCAAAGCTTAGCTCAGTGTGCGATGATTGGAAGAAAGAAATGGTTGAAACTCTGAAAGTGGCCTTGTTATGCACTCACATCAGGCCAAATATCCGACCAAACATCAACAACGTTATGGGAATGCTTCGAGAAATAAGGAACCCAATTGATTTCTGTGAAGATTGA 2694 0.4046 MLFSVMRILCLLPFLLTLYLSKSLLVGGELHEQTLLPSINQNLRVPGWNASTSDYCSLKGVICGNLSLVEKLILSNQNLGGNVSSISGLKALKWLDLSNNSFQGMIPAAFGNLSHLEYLDLSSNQFEGSIPPQLGGLKSLKSLNFSNNMLVGEIPKELQGLESLQDFQIFNNHLSGSIPSWVGNWTNLRVFAAYENHFNGRIPDALGFISELKTLNLHSNQLEGPIPGSLFSAWQLEVLILSQNNLSGEIPEEIGNCRTLLSVRIGKNNLQGNIPKSVGNLTSLAYFEADDNNLSGELVSEFSLCYNLTFLNLASNGFTGTISPEFGKLMNLQVLMLSENHLYGDIPESILQIKSLTILDLSNNRFNGTIPNGICDIAQLQKLLLDQNFIRGVIPQEIGRCRELLELKLGSNNLTGTIPSQIGDMHNLEIALNLSYNHLQGQLPPELGRLVKLGSLDISNNNLSGNIPDTFTGMLGLIVINMSNNQLTGKLPKCPSFLHNPASSYLGNRGLCGEPLNITCEDIPYNYIAVENSNKFTYKTIIYIFGPFLLAFMFFAVVAFVNRVCQRKVANVPEIECGEIIKEPSIISANVFADNLREEVDLEAVAKATLEESNKLSSGTFSAVYKAVMPSGVLLLVRKIIPMDMTVMQRQNKIISELERLRKISHEHVMKPVGYVICSDAALLVYQYISCGTLAQLLHDPAMQPEYQLDWPARFSIAMGIAKGLFFLHHRAIIHLDISSSNILLDANLGPLIGDIEISKFLDQTKGSASIVPYAGSFGYVPPEYAYTMQVTAAGNIYSFGVILLEIITSREAFDEGNGEGVDLVKWVQEAEARGETPEQILDAKLSSVCDDWKKEMVETLKVALLCTHIRPNIRPNINNVMGMLREIRNPIDFCED 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00413 897 ProSitePatterns Tyrosine protein kinases specific active-site signature. 733 745 IPR008266 GO:0004672|GO:0006468
Vimu3g00413 897 SMART LRR_typ_2 329 353 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 450 473 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 113 136 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 209 233 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 354 377 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 137 160 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 235 257 IPR003591 -
Vimu3g00413 897 SMART LRR_typ_2 89 112 IPR003591 -
Vimu3g00413 897 Pfam Protein kinase domain 611 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00413 897 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 229 523 - -
Vimu3g00413 897 FunFam Nuclear pore complex protein NUP107 34 180 - -
Vimu3g00413 897 Gene3D Ribonuclease Inhibitor 5 235 IPR032675 -
Vimu3g00413 897 Gene3D Ribonuclease Inhibitor 236 523 IPR032675 -
Vimu3g00413 897 Gene3D Phosphorylase Kinase; domain 1 577 688 - -
Vimu3g00413 897 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 689 893 - -
Vimu3g00413 897 ProSiteProfiles Protein kinase domain profile. 610 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00413 897 Gene3D Transferase(Phosphotransferase) domain 1 690 893 - -
Vimu3g00413 897 SUPERFAMILY RNI-like 169 526 - -
Vimu3g00413 897 SUPERFAMILY Protein kinase-like (PK-like) 605 885 IPR011009 -
Vimu3g00413 897 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 152 885 - -
Vimu3g00413 897 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 580 688 - -
Vimu3g00413 897 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Vimu3g00413 897 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
Vimu3g00413 897 SUPERFAMILY L domain-like 61 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00413 Vimu-Chr3 3996293 3999087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00413 6 889 Receptor kinase-like Gene Family AT2G41820 55.269 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g00413 Pkinase 5.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00413 - - vum:124827200 1590.47