Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00412 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGTTCGGTCTCTGATTGCAAGCAGATCGATTTTTTGCCCTTTACCTGTGATCGCTGCCACCAGGTTTATTGTTTGGAGCACAGAGGTTATATTAAACATCAGTGTCCAAAAGCAGACAAGCAAGATGTTACTGTAGTTGTATGTCCACTTTGCGCTAAAGGAGTTCGTTTAGTTCCTGATCAAGATGCAAATATAACTTGGGAGAATCATGTCAACACTGACTGTGACCCATCGAACTATGAGAAAGTCACGAAGAAGAAAAAATGCCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCATGGTAGACCATTGTTTAAAGCATCGTTTTGGACCTGATCATAAATGTCCTGGTCCCAGAAAAATGGAAACAAATTTTTCATTCAGGAATCTTTTGAATGTGAGTAAAAAACAGGAGTCCAAACCCCAGCCAAGTTCATCTGCTTCATCTAGATGGTCTACAGGCTTTCTTAATGCAGTTTCTAACATTCGATCATCAGCGGAGGCTGGTGTGTCGAAGTTGAGTGAAGTTAACCAAGGCTGGTGGAAAGCATCAGGTGGGGTGGGAGCTAGCCAGAGTAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCTAAGTTTTCCTCTGTTACTGCTTTGGTGGACCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGACCAAAGGTTACAATTGATGCTTGCCCTAAGTGTAGCAGAGGATTTCAGGATCCTGTTGCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGCAATTCTAGATCATAA 858 0.4406 MGTPEFPDLGKHCSVSDCKQIDFLPFTCDRCHQVYCLEHRGYIKHQCPKADKQDVTVVVCPLCAKGVRLVPDQDANITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCMVDHCLKHRFGPDHKCPGPRKMETNFSFRNLLNVSKKQESKPQPSSSASSRWSTGFLNAVSNIRSSAEAGVSKLSEVNQGWWKASGGVGASQSSGQVEQCPQCGAKFSSVTALVDHVQKVHERSGNRSGPKVTIDACPKCSRGFQDPVALVEHVERDHGGNSRS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00412 285 ProSitePatterns Zinc finger C2H2 type domain signature. 221 242 IPR013087 -
Vimu3g00412 285 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Vimu3g00412 285 Pfam C2H2-type zinc finger 220 242 - -
Vimu3g00412 285 Gene3D Classic Zinc Finger 197 282 - -
Vimu3g00412 285 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 247 - -
Vimu3g00412 285 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Vimu3g00412 285 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Vimu3g00412 285 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vimu3g00412 285 SMART c2h2final6 219 242 IPR013087 -
Vimu3g00412 285 SMART c2h2final6 256 279 IPR013087 -
Vimu3g00412 285 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vimu3g00412 285 Gene3D - 86 172 IPR035896 -
Vimu3g00412 285 Gene3D - 2 58 IPR035896 -
Vimu3g00412 285 SUPERFAMILY AN1-like Zinc finger 4 57 IPR035896 -
Vimu3g00412 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 247 IPR013087 -
Vimu3g00412 285 ProSitePatterns Zinc finger C2H2 type domain signature. 258 279 IPR013087 -
Vimu3g00412 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 284 IPR013087 -
Vimu3g00412 285 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vimu3g00412 285 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vimu3g00412 285 SUPERFAMILY AN1-like Zinc finger 93 148 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00412 Vimu-Chr3 3988764 3991667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00412 1 285 C2H2 Transcription Factor Family AT2G41835 63.542 1.34e-126 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g00412 zf-AN1 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00412 - - gmx:100786272 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00412 3 3988764 3991667 Vimu3g00412 3 3988764 3991667 ECH
Vimu6g03031 6 26775113 26777158 Vimu3g00412 3 3988764 3991667 PCT