Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00408 ATGGGGAACAGTTGCGTGACTCCGGTCAGGATCAGACGGGAGAGGAGGCAGAGGAAGCGGGAGGAAGCGGCGGCCAAGAAGCTCGTCGTGCTCAAGGACCCCACGGGCCGTGATATTGGGCTGCGTTATGAATTGGGCCGGGAGCTGGGCCGAGGGGAGTTCGGCGTGACGTACCTGTGCCGTGATAAGGAGACGAAGGAGGAGTGGGCGTGCAAATCGATATCCAAGAAGAAACTGCGAACCGCCATTGATATCGAGGATGTGCGTAGGGAGGTGGAGATCATGCGACACTTGCCCAAACACCCCAACATCGTCTCGCTCAAGGACACATTCGAAGACGACAGTGCTGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGCGAGCTCTTCGACCGCATTGTCGCGCGCGGCCACTACACCGAGCGCGCCGCCGCAACCGTCGTCAAAACCATCGTCGAAGTTGTCCAGGTCCGCTGCCAAATCCTTTCTCTTTACCGTTTTTGCATGGTCGTTAACTCGTCTTTCTTTTTCGTGTGTAAGTTAAATTCAGTACCAACACGCGTCGTTGGGTGGTGGTTGCCGCGGTAG 588 0.5748 MGNSCVTPVRIRRERRQRKREEAAAKKLVVLKDPTGRDIGLRYELGRELGRGEFGVTYLCRDKETKEEWACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKDTFEDDSAVHLVMELCEGGELFDRIVARGHYTERAAATVVKTIVEVVQVRCQILSLYRFCMVVNSSFFFVCKLNSVPTRVVGWWLPR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00408 195 Pfam Protein kinase domain 43 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00408 195 FunFam Calcium-dependent protein kinase 1 45 128 - -
Vimu3g00408 195 ProSiteProfiles Protein kinase domain profile. 43 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00408 195 Gene3D Transferase(Phosphotransferase) domain 1 85 156 - -
Vimu3g00408 195 Gene3D Phosphorylase Kinase; domain 1 47 123 - -
Vimu3g00408 195 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 156 - -
Vimu3g00408 195 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
Vimu3g00408 195 SMART serkin_6 43 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00408 195 SUPERFAMILY Protein kinase-like (PK-like) 42 155 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00408 Vimu-Chr3 3944952 3945539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00408 1 193 EF-hand Containing Proteins AT5G19450 57.005 1.48e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g00408 Pkinase 3.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00408 K13412 - gmx:100815320 239.195