Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00407 ATGGAGAAGATGGCTGCACTTACTAATATCCACACCTCCTTCTTCCCCACCAACACCATTCTTCCAAAGCCATCATCTTTTCAACCCTTCTTCTCTACCCGACTTCTTGGCCTACCCTTATCTTCTTCTTTTTCCGTCTCCAAAAGATTATCTTCCTTCACTTCCAGGCCCATCAAATGTTCTGTTTCCGAAGCCACAGAGCCCAAAGCTGGTGAGAAGAAGAAACAATTGTTGAGAAGAGGGGACGTGAGAAACATAGCGATTGTTGCTCATGTTGATCATGGAAAGACTACACTCGTTGATGCCATGCTCAAACAAACCAAGGTATTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCGAATGATTTGGAGCGCGAAAGAGGGATCACAATACTGAGTAAAAATACATCTGTCACTTATAAAGACACAAAGATCAATATAATAGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGTATCTTAAATATGGTGGAAGGGATCCTTCTAGTGGTAGATTCTGTTGAAGGACCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTGGAGTTTGGTCATTCAGTTGTTGTGGTTGTGAATAAAATAGATAGACCTTCTGCTCGCCCAGATTTTGTTGTCAATTCTACTTTTGAACTCTTCATTGAACTGAATGCCACAGACGAACAGTGTGACTTTCAAGTAATCTATGCAAGTGGTATAAAAGGGCAAGCAGGTTTGTCTCCTGAAAATCTGGCAGAAGACCTTGGTCCATTGTTTGAATCCATAATTAGATGCATCCCTGGACCGCGCATTGACAAAGATGGTGCTCTTCAAATGCTGGTGACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGTGTGCAAGCTGGCGTTTTGCAAAAAGGAATGGACGTTCGAGTATGTACTTCAGAAGATTCGTGTAGATTTGGAAGAATTAGTGAGCTCTACGTGTATGACAAATTCAGTAGGGTTCCTGCAGATAATGTGGAGGCAGGTGATATATGTGCAGTGTGTGGAATTACTGACATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAGCCACTACCTTCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAACTTAAGGGATAGGCTTTATCGTGAACTTGAGCGGAATCTGGCTATGAAAGTTGAAGATGGTGAGACAGCTGATACATTTGTTGTCAGTGGGCGTGGAACTTTACATATCACTATACTCATAGAAAATATGCGAAGAGAAGGCTATGAATTCATGGTTGGACCTCCCAAAGTTATCAACAAGCAGCTGAATGAAAAATTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGACAGATGTTTGACATGCAAGGAGTTGGATCGGAAGGAACTACACTACTCAAATATAAGATTCCAACACGTGGTCTTCTTGGATTGAGGAATTCTATTTTAACCGCATCCCGAGGAACGGCTATTCTCAACACCGTCTTCGATAGCTATGGACCTTGGGCCGGTGAAATTAGTACCCGTGATCAAGGCTCATTGGTAATGTCTGCAGTGAAAGAAATTTGTAGAGCATGGTACTCCATAATTTCATTGTTTCCCTCAATCATTGATGAAGTTATGGAATTTCAGGTTGCTTTTGAGGATGGAGCAAGTACTTCTTATGCAATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGACCTGGTGTGGAAGTTTATAGAGGTCAAATTGTTGGCATCCATCAGCGTCCTGGCGACTTGTCCTTGAATGTCTGTAAGAAGAAAGCTGCTACCAACATTCGTTCCAATAAGGAACAAACAGTGATTCTTGATACACCATTAGACTATAGTCTGGATGATTGCATTGAATACATCCAAGAAGATGAACTTGTAGAGGTCACCCCAACAAGTATCCGAATGTGCAAGAATCCAAAATTAGCAAAGAAACAAAGGTAG 2118 0.4197 MEKMAALTNIHTSFFPTNTILPKPSSFQPFFSTRLLGLPLSSSFSVSKRLSSFTSRPIKCSVSEATEPKAGEKKKQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLQKGMDVRVCTSEDSCRFGRISELYVYDKFSRVPADNVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKQLNEKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGPWAGEISTRDQGSLVMSAVKEICRAWYSIISLFPSIIDEVMEFQVAFEDGASTSYAISSSQERGQMFIGPGVEVYRGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPTSIRMCKNPKLAKKQR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00407 705 CDD TypA_BipA 82 275 IPR047041 -
Vimu3g00407 705 CDD BipA_TypA_II 283 376 IPR047042 -
Vimu3g00407 705 Gene3D - 81 276 IPR027417 -
Vimu3g00407 705 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 80 251 - -
Vimu3g00407 705 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 122 137 IPR031157 -
Vimu3g00407 705 FunFam GTP-binding protein TypA 80 276 - -
Vimu3g00407 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 283 IPR027417 -
Vimu3g00407 705 NCBIfam small GTP-binding protein domain 84 232 IPR005225 GO:0005525
Vimu3g00407 705 Pfam Elongation factor Tu GTP binding domain 83 273 IPR000795 GO:0003924|GO:0005525
Vimu3g00407 705 FunFam GTP-binding protein TypA 277 377 - -
Vimu3g00407 705 CDD BipA_III 383 461 IPR047043 -
Vimu3g00407 705 Gene3D Elongation Factor G (Translational Gtpase), domain 3 378 466 - -
Vimu3g00407 705 Pfam Elongation factor G C-terminus 474 559 IPR000640 -
Vimu3g00407 705 Gene3D - 467 560 - -
Vimu3g00407 705 SUPERFAMILY EF-G C-terminal domain-like 381 465 IPR035647 -
Vimu3g00407 705 FunFam GTP-binding protein TypA 467 560 - -
Vimu3g00407 705 Gene3D Translation factors 277 377 - -
Vimu3g00407 705 SUPERFAMILY EF-G C-terminal domain-like 476 568 IPR035647 -
Vimu3g00407 705 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 81 276 IPR000795 GO:0003924|GO:0005525
Vimu3g00407 705 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Vimu3g00407 705 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Vimu3g00407 705 PRINTS GTP-binding elongation factor signature 129 137 IPR000795 GO:0003924|GO:0005525
Vimu3g00407 705 PRINTS GTP-binding elongation factor signature 85 98 IPR000795 GO:0003924|GO:0005525
Vimu3g00407 705 SMART EFG_C_a 473 562 IPR000640 -
Vimu3g00407 705 SUPERFAMILY Translation proteins 229 376 IPR009000 -
Vimu3g00407 705 Pfam Elongation factor Tu domain 2 297 366 IPR004161 GO:0005525
Vimu3g00407 705 NCBIfam translational GTPase TypA/BipA 83 572 IPR006298 GO:0003924|GO:0005525
Vimu3g00407 705 Gene3D bipa protein 595 681 IPR042116 -
Vimu3g00407 705 CDD BipA_TypA_C 476 555 IPR035651 -
Vimu3g00407 705 FunFam GTP-binding protein TypA 384 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00407 Vimu-Chr3 3932571 3938944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00407 83 210 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 4.87e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00407 K06207 - gmx:100785222 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00407 3 3932571 3938944 Vimu3g00407 3 3932571 3938944 ECH