Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g00407 | ATGGAGAAGATGGCTGCACTTACTAATATCCACACCTCCTTCTTCCCCACCAACACCATTCTTCCAAAGCCATCATCTTTTCAACCCTTCTTCTCTACCCGACTTCTTGGCCTACCCTTATCTTCTTCTTTTTCCGTCTCCAAAAGATTATCTTCCTTCACTTCCAGGCCCATCAAATGTTCTGTTTCCGAAGCCACAGAGCCCAAAGCTGGTGAGAAGAAGAAACAATTGTTGAGAAGAGGGGACGTGAGAAACATAGCGATTGTTGCTCATGTTGATCATGGAAAGACTACACTCGTTGATGCCATGCTCAAACAAACCAAGGTATTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCGAATGATTTGGAGCGCGAAAGAGGGATCACAATACTGAGTAAAAATACATCTGTCACTTATAAAGACACAAAGATCAATATAATAGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGTATCTTAAATATGGTGGAAGGGATCCTTCTAGTGGTAGATTCTGTTGAAGGACCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTGGAGTTTGGTCATTCAGTTGTTGTGGTTGTGAATAAAATAGATAGACCTTCTGCTCGCCCAGATTTTGTTGTCAATTCTACTTTTGAACTCTTCATTGAACTGAATGCCACAGACGAACAGTGTGACTTTCAAGTAATCTATGCAAGTGGTATAAAAGGGCAAGCAGGTTTGTCTCCTGAAAATCTGGCAGAAGACCTTGGTCCATTGTTTGAATCCATAATTAGATGCATCCCTGGACCGCGCATTGACAAAGATGGTGCTCTTCAAATGCTGGTGACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGTGTGCAAGCTGGCGTTTTGCAAAAAGGAATGGACGTTCGAGTATGTACTTCAGAAGATTCGTGTAGATTTGGAAGAATTAGTGAGCTCTACGTGTATGACAAATTCAGTAGGGTTCCTGCAGATAATGTGGAGGCAGGTGATATATGTGCAGTGTGTGGAATTACTGACATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAGCCACTACCTTCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAACTTAAGGGATAGGCTTTATCGTGAACTTGAGCGGAATCTGGCTATGAAAGTTGAAGATGGTGAGACAGCTGATACATTTGTTGTCAGTGGGCGTGGAACTTTACATATCACTATACTCATAGAAAATATGCGAAGAGAAGGCTATGAATTCATGGTTGGACCTCCCAAAGTTATCAACAAGCAGCTGAATGAAAAATTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGACAGATGTTTGACATGCAAGGAGTTGGATCGGAAGGAACTACACTACTCAAATATAAGATTCCAACACGTGGTCTTCTTGGATTGAGGAATTCTATTTTAACCGCATCCCGAGGAACGGCTATTCTCAACACCGTCTTCGATAGCTATGGACCTTGGGCCGGTGAAATTAGTACCCGTGATCAAGGCTCATTGGTAATGTCTGCAGTGAAAGAAATTTGTAGAGCATGGTACTCCATAATTTCATTGTTTCCCTCAATCATTGATGAAGTTATGGAATTTCAGGTTGCTTTTGAGGATGGAGCAAGTACTTCTTATGCAATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGACCTGGTGTGGAAGTTTATAGAGGTCAAATTGTTGGCATCCATCAGCGTCCTGGCGACTTGTCCTTGAATGTCTGTAAGAAGAAAGCTGCTACCAACATTCGTTCCAATAAGGAACAAACAGTGATTCTTGATACACCATTAGACTATAGTCTGGATGATTGCATTGAATACATCCAAGAAGATGAACTTGTAGAGGTCACCCCAACAAGTATCCGAATGTGCAAGAATCCAAAATTAGCAAAGAAACAAAGGTAG | 2118 | 0.4197 | MEKMAALTNIHTSFFPTNTILPKPSSFQPFFSTRLLGLPLSSSFSVSKRLSSFTSRPIKCSVSEATEPKAGEKKKQLLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLQKGMDVRVCTSEDSCRFGRISELYVYDKFSRVPADNVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKQLNEKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGPWAGEISTRDQGSLVMSAVKEICRAWYSIISLFPSIIDEVMEFQVAFEDGASTSYAISSSQERGQMFIGPGVEVYRGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPTSIRMCKNPKLAKKQR | 705 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g00407 | 705 | CDD | TypA_BipA | 82 | 275 | IPR047041 | - | |
Vimu3g00407 | 705 | CDD | BipA_TypA_II | 283 | 376 | IPR047042 | - | |
Vimu3g00407 | 705 | Gene3D | - | 81 | 276 | IPR027417 | - | |
Vimu3g00407 | 705 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 80 | 251 | - | - | |
Vimu3g00407 | 705 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 122 | 137 | IPR031157 | - | |
Vimu3g00407 | 705 | FunFam | GTP-binding protein TypA | 80 | 276 | - | - | |
Vimu3g00407 | 705 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 76 | 283 | IPR027417 | - | |
Vimu3g00407 | 705 | NCBIfam | small GTP-binding protein domain | 84 | 232 | IPR005225 | GO:0005525 | |
Vimu3g00407 | 705 | Pfam | Elongation factor Tu GTP binding domain | 83 | 273 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | FunFam | GTP-binding protein TypA | 277 | 377 | - | - | |
Vimu3g00407 | 705 | CDD | BipA_III | 383 | 461 | IPR047043 | - | |
Vimu3g00407 | 705 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 378 | 466 | - | - | |
Vimu3g00407 | 705 | Pfam | Elongation factor G C-terminus | 474 | 559 | IPR000640 | - | |
Vimu3g00407 | 705 | Gene3D | - | 467 | 560 | - | - | |
Vimu3g00407 | 705 | SUPERFAMILY | EF-G C-terminal domain-like | 381 | 465 | IPR035647 | - | |
Vimu3g00407 | 705 | FunFam | GTP-binding protein TypA | 467 | 560 | - | - | |
Vimu3g00407 | 705 | Gene3D | Translation factors | 277 | 377 | - | - | |
Vimu3g00407 | 705 | SUPERFAMILY | EF-G C-terminal domain-like | 476 | 568 | IPR035647 | - | |
Vimu3g00407 | 705 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 81 | 276 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | PRINTS | GTP-binding elongation factor signature | 149 | 159 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | PRINTS | GTP-binding elongation factor signature | 201 | 210 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | PRINTS | GTP-binding elongation factor signature | 129 | 137 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | PRINTS | GTP-binding elongation factor signature | 85 | 98 | IPR000795 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | SMART | EFG_C_a | 473 | 562 | IPR000640 | - | |
Vimu3g00407 | 705 | SUPERFAMILY | Translation proteins | 229 | 376 | IPR009000 | - | |
Vimu3g00407 | 705 | Pfam | Elongation factor Tu domain 2 | 297 | 366 | IPR004161 | GO:0005525 | |
Vimu3g00407 | 705 | NCBIfam | translational GTPase TypA/BipA | 83 | 572 | IPR006298 | GO:0003924|GO:0005525 | |
Vimu3g00407 | 705 | Gene3D | bipa protein | 595 | 681 | IPR042116 | - | |
Vimu3g00407 | 705 | CDD | BipA_TypA_C | 476 | 555 | IPR035651 | - | |
Vimu3g00407 | 705 | FunFam | GTP-binding protein TypA | 384 | 490 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g00407 | Vimu-Chr3 | 3932571 | 3938944 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g00407 | 83 | 210 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 44.615 | 4.87e-24 | 106 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g00407 | K06207 | - | gmx:100785222 | 1202.58 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g00407 | 3 | 3932571 | 3938944 | Vimu3g00407 | 3 | 3932571 | 3938944 | ECH |