Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00394 ATGAACCACTTGACCATTGAGACGGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAACAATGATGTTGAAGGTTTTAAACGAATGATTGAGAGGGATCCTTCCTGTGTAGACGAGGTAGGACTATGGTACAGTCGGCAGAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCATTGATGGTTGCTGCTACTTACGGGAGCATTGATGTTTTGGATCTGATTCTCTCACTTTCTGGTTATGATATTAATAAACCTTGTGGCCTTGACAAAAGCACTGCTCTTCACTGTGCCGCTTCAGGCGGTGCTGAAAATGCTGTTGATGTTGTTATATTGCTTTTAGCAGCCGGGGCTGATCCAAACTCTGTTGATGGAAATGGTCATCGTCCAGTTGATGTCATTGTTGTTCCTCCCAAGCATGAAACTATTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCAGTGTGTAATCTCAGGGTGATCACAGCCCCATCAAATGCATATTCTCCACCATTGTCAACTTCACCAGAGAATGGCTCTCCTTCTGCACCAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTTGTTTCTTCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCTGACATCAAAAATAGCATATATTCAACAGATGAATTCCGGATGTATTCTTTCAAAGTTCGACCTTGTTCACGTGCTTATTCACATGATTGGACAGAATGCCCTTTTGTTCATCCTGGGGAGAATGCTCGGAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGACGAGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGTTGGCTGCATCCAGCACAGTATCGTACTCGTCTTTGCAAAGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCTCGTTCAAGCACATCTTCTGCTATGGAATTTGCTGCAGCTATGAACATGTTACCTGGATCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCATTCACCCCACCCATGTCACCCTCTGCCAATGGCATGTCACACTCTTCCGTTGGCTGGCCCCAGCCAAATGTCCCTGCCTTGCATCTTCCAGGAAGCAATCTTCATTCCAGTCGATTGAGATCTTCATTCAATGCCAGAGATATTCCTATGGATGAGTTTGACATGTTGCCTGAGTACGATGCTCAGCAGCAGCAACAACTCCTTAACGAGTTCTCTTGCCTCTCTAAACAGCCTAATGCCATGAACCGCTCCGGCCGCATTAAAACACTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCACCTCGGTTTGCTGATCCAGCATTGGCTTCGGCTGTTTTTTCTCCAACACATAAATCAGCTATTCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCGCCTGTGAACACAAATTTTTCTTCTAAAAATGTTGAGAATCCTTTATTGCAGGCTGCCTCATTTGGGGTTCAAACATCAGGTAGGATGTCTCCTCGGAATGTGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGGAGTCTTAGCTCAAGGGAACTTGGCTCCAACTCTGCTACTGTTGCTGCTGCTGCTGCTGCTGCTGGGTCCCCAGTGAATTCTTGGTCAAAATGGGGACCCTCGAATGGTACATTGGATTGGGCTGTCAATGCTGATGAGTTAAGGAAACATCGTAGATCATCTTCGTTTGAGCATGGGAATAATAGTGAGGAGCCTGATTTCTCATGGGTGCAATCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAACTCAACTGCAACTGTCTCAAGTGGTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGACTCTGTTGATCATGCTGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCTTGTGGCTCAGCAAAACTAA 2112 0.4522 MNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSIDVLDLILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHETIRNSLEALLQTDDSIAVCNLRVITAPSNAYSPPLSTSPENGSPSAPDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMEFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVGWPQPNVPALHLPGSNLHSSRLRSSFNARDIPMDEFDMLPEYDAQQQQQLLNEFSCLSKQPNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTNFSSKNVENPLLQAASFGVQTSGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSATVAAAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSTATVSSGAAAGSSSEVSNMSTQMDSVDHAVLGAWLEQMQLDLVAQQN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00394 703 Gene3D - 272 333 - -
Vimu3g00394 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Vimu3g00394 703 MobiDBLite consensus disorder prediction 649 676 - -
Vimu3g00394 703 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vimu3g00394 703 SMART ANK_2a 10 39 IPR002110 GO:0005515
Vimu3g00394 703 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vimu3g00394 703 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Vimu3g00394 703 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Vimu3g00394 703 Gene3D - 8 159 IPR036770 -
Vimu3g00394 703 MobiDBLite consensus disorder prediction 173 192 - -
Vimu3g00394 703 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Vimu3g00394 703 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Vimu3g00394 703 PANTHER UNKEMPT FAMILY MEMBER 17 648 IPR045234 -
Vimu3g00394 703 Pfam Ankyrin repeats (3 copies) 49 126 IPR002110 GO:0005515
Vimu3g00394 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Vimu3g00394 703 SUPERFAMILY Ankyrin repeat 12 139 IPR036770 -
Vimu3g00394 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00394 Vimu-Chr3 3767403 3769514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00394 7 697 C2H2 Transcription Factor Family AT5G12850 54.326 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g00394 Ank_2 3.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00394 - - gmx:100813554 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00394 3 3767403 3769514 Vimu3g00394 3 3767403 3769514 ECH