Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00392 ATGATTCATCAACCAACTATTCTACTCACAACAAATTTCCAATTGCATTCTTCTCTTCCTAAACTCATGGCCGAATCACTTCTTTTCAGAATCGCAGAATCAGTCTTAGGGAAGCTTGCTACTGCTGCTGTTCATGAAGCTTCTTTGGCGCTTGGTGTGCGTAGCGAGCTACAACAGATGAAAGAGAATATGGAAATCATCAGAGGTGTTCTCTTAGATGCTGAGAAGAAGACTACGCAGAGCAGTGGGTTGAGCGAATGGCTGAGACAGGTCAAGCGCTTGTTTTCTGATGCTGAAGATATAGTCGATGATTTTGAGTGCGAAGCATTAAGGAAGCATGTTGTCAACACATACGGTAGCTGCTCAAGAAAGGTACGCCGTTTTTTATCGAAAAGTAACCCTGTTGTTTATCGTCTTAGAATGGCACATCACATTCAAGACATCAACACCAGATTGGCCAAACTTGCAGCTGATAGGAACATGTTTGGCCTTCAAATAATTGACCATGATACACGTGTTGTCCACGTGAGGGAAATGACTCATTCTCATGTAAACCCTTCCAATGTTACAGGAAGGGAACATGATAAGAATGAAATAGTAAAACTTTTGGTGCAAGATGGTGATTTTCAAAGTCTTTCTGTTATTTCCATTGTGGGAATGGGAGGCTTGGGAAAAACCACACTTGCCAAGTTGGTCTTCAATGACACAAACATTGATGAATGTTTTCAGTTGAAGATGTGGGTCTGTGTTTCTAATGATTTTGAACTTAGGAATGTGCTCATTAAAATCCTCAATTCTGCTCCAAATCTAACTCGGGAAAACTTTAATAACTTTGAGACGGAGCAACTTCAAAACCTTCTGAGAAATAGACTTGAAGGTAAGAAGTTCTTGCTTGTGTTGGATGACGCGTGGAACGAGGACCCTGCACGATGGCATGAGTTGAAGGAAATAATAGATGTGGATGTTGAAGGTAGTAAAGTCCTAGTGACCACTCGTAGTCATGCAGCAGCAACCATAATGCACACTAAATCATCAAATTTGTATCTTCTAGGATGTCTCTCTAAGGAGGATTCTCTTTCACTATTTTTGAAATTTGCTTTTGATGATGGAGAAGAAAACAAACATCCAGAACTGTTGGAGATTGGAAAAGAAATAGTGGAAAAATGTGGTGGGTTACCTTTAGCAGTGAAAACAGTTGGGAGTTCATTGTTCTCAAAGTTTGATAAGAAAGAGTGGGAGTCTATAAGAGACAATGAGATTTGGAGTTTAAAACAAAATGAAGAAGGCATTTTGCCTGCTCTCAAACTAAGTTACGATCAACTCCCTTCATATTTAAAACCTTGTTTTGCTTCTTTCTCCCTTTGCCCACAGAATGCTATAATTATTTGTTCTCAAATTTCTACCATGTGGGAAGCACTTGGTTTTCTTCCGCCCCCAAAGGAAAGTGAATCAATGGTGGATGTTGCCAATCATCTTGTGTATGAGCTATGGTCAAGATCTTTTCTTGCTGATTATTTTGACTTCGGGGGTGATTCCTCATTTACGTTACATGATTTGGTGTATGATCTTGTAGTTCATATTGCCAAAGGTGAGTTTGAAAGAATAAATCTCCGCAATCAAAAATTTCCTGAGAATGCCCAACATTTAGTCTTTATGGAAAATAATTTGCATGGTCAAGCTTTTCCTCACACAAGTTTAAAAAGTGTGTACCTTTGCCAGGGAATGAACAATGAAGCTTTCTTGATTAAATTGGTGTCAAGATGCAAATACTTGAGGATTTTAGAATTATACTCATCTGAAATCGAGAGTTTGCCTTACTCTATTGGAAAGTTGAAACATTTAAGACATCTTAATCTCCAGAATAGTAAAAAACTCAAGAGACTCCCTGATTCAGTCTGCAAACTTCAAAATTTGCAAACTTTGGATCTCTTAGGATGTGTAGAGCTACAAAAACTACCCAAAGGAATGAGAAATCTAATCAGCCTTCGGAATCTTTTTATAACCACCAAACAAGTTGATTTTCCAGACAAAGACATTGAAGTTTTGACTTCTTTAGAAAAATTAAATTTTAGTTATTGCAATAATTTGGAGTCATTGTTCAATGGTATACAACTATCCACTCTTAAAAAATTAGCCTTATTGGGATGTGAAAGTCTAAAGTCGGTGCCGTTTCACGCCATTAGAAATATAAATGTTTTGGCTATCTATAACTGTGACAAGTTGGAATTGTCAATGGGTGTTGGAAGTCAAATCCCTGATTCAAGGTTAAAGTATGTTGTTCTTAAAGACTTGCCGCAACTAGTCACGTTGCCTAAGTGGATTCAAGGATCTGCAAACTTTTTACAATCCTTATTTATTGATGGTTGTATCAATCTTAAAGAGCTTCCCGATTGGCTAACAACTCTAATTTATCTCAATTTTTTTAGTATTGGTAAATGTCCAAATTTATTGTCACTGCCTGACAACATGCATCAGCTGACAAATCTTGAAAGATTAGAAATAAGTGGTTGTCCTGAATTATGGAAAAGATTCAAACCAGGAGTTGGACATGATTGGTACAAAATATCACACATCAAACATGTTTACAATCCAGAAGAAGATGAAGAATAA 2610 0.3739 MIHQPTILLTTNFQLHSSLPKLMAESLLFRIAESVLGKLATAAVHEASLALGVRSELQQMKENMEIIRGVLLDAEKKTTQSSGLSEWLRQVKRLFSDAEDIVDDFECEALRKHVVNTYGSCSRKVRRFLSKSNPVVYRLRMAHHIQDINTRLAKLAADRNMFGLQIIDHDTRVVHVREMTHSHVNPSNVTGREHDKNEIVKLLVQDGDFQSLSVISIVGMGGLGKTTLAKLVFNDTNIDECFQLKMWVCVSNDFELRNVLIKILNSAPNLTRENFNNFETEQLQNLLRNRLEGKKFLLVLDDAWNEDPARWHELKEIIDVDVEGSKVLVTTRSHAAATIMHTKSSNLYLLGCLSKEDSLSLFLKFAFDDGEENKHPELLEIGKEIVEKCGGLPLAVKTVGSSLFSKFDKKEWESIRDNEIWSLKQNEEGILPALKLSYDQLPSYLKPCFASFSLCPQNAIIICSQISTMWEALGFLPPPKESESMVDVANHLVYELWSRSFLADYFDFGGDSSFTLHDLVYDLVVHIAKGEFERINLRNQKFPENAQHLVFMENNLHGQAFPHTSLKSVYLCQGMNNEAFLIKLVSRCKYLRILELYSSEIESLPYSIGKLKHLRHLNLQNSKKLKRLPDSVCKLQNLQTLDLLGCVELQKLPKGMRNLISLRNLFITTKQVDFPDKDIEVLTSLEKLNFSYCNNLESLFNGIQLSTLKKLALLGCESLKSVPFHAIRNINVLAIYNCDKLELSMGVGSQIPDSRLKYVVLKDLPQLVTLPKWIQGSANFLQSLFIDGCINLKELPDWLTTLIYLNFFSIGKCPNLLSLPDNMHQLTNLERLEISGCPELWKRFKPGVGHDWYKISHIKHVYNPEEDEE 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00392 869 Gene3D Ribonuclease Inhibitor 752 850 IPR032675 -
Vimu3g00392 869 Gene3D Ribonuclease Inhibitor 532 751 IPR032675 -
Vimu3g00392 869 FunFam Probable disease resistance protein At1g61300 171 345 - -
Vimu3g00392 869 SUPERFAMILY L domain-like 516 839 - -
Vimu3g00392 869 Coils Coil 57 77 - -
Vimu3g00392 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 450 IPR027417 -
Vimu3g00392 869 CDD RX-CC_like 34 156 IPR038005 -
Vimu3g00392 869 Gene3D - 352 442 IPR042197 -
Vimu3g00392 869 PRINTS Disease resistance protein signature 389 403 - -
Vimu3g00392 869 PRINTS Disease resistance protein signature 633 649 - -
Vimu3g00392 869 PRINTS Disease resistance protein signature 214 229 - -
Vimu3g00392 869 PRINTS Disease resistance protein signature 290 304 - -
Vimu3g00392 869 Pfam NB-ARC domain 192 439 IPR002182 GO:0043531
Vimu3g00392 869 Gene3D - 172 347 IPR027417 -
Vimu3g00392 869 Gene3D - 32 146 - -
Vimu3g00392 869 Pfam Rx N-terminal domain 33 120 IPR041118 -
Vimu3g00392 869 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 599 667 IPR039203 GO:0050832
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00392 Vimu-Chr3 3735573 3738182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00392 212 840 WRKY Transcription Factor Family AT5G45050 24.699 1.34e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00392 - - vra:106771654 1184.09