Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00385 ATGGCCGAATCACTCATTGTCGCGGTTGCAGAATCACTTATAACGAAGCTCGCTTCTCGAGCTGTCGAACAAGCTTCTTTGACGTTGGGTGTATACCAAGAGCTACAGCAGATGAAAAAGACCATGGCACTGGTCAAAGCATTCCTGTTAGACGCTGAGCAAAAGAAGCAGCAGAATAATGCCCTGAGTGAGTGGCTAAGACAGATCAGGCAGGTGTTCGCCCACGCGGAAGACATAGTCGACAACTTTGAATGCGAAGTGTTGCGGAAGCATGTTGTCAGCTCTCACGGCAGCTTCTGCAGGAAGGTATGTCGTTTGCTTTCAACTAGTAATCCTGTGGTTTATCGTTACAGAATGGGGCGTGAGATAAAAGGCATCAAGAAGCAGTTAGAGAAGGTTGCAACTGATGGGCACATGTTTGGTCTTCAAAGCAGTGACAAGGATACAAAGGTTTTGCATGCGAGGGAAATGACTCATTCACATGTAAATGTCTCAAATGTGGTTGGGAGAGAACATGATAAGCAGAAGATAATAGAGCTTTTGCTGCAAGATGATCATCATGACAGAAGTCTCTCAGTGATTTCCATTGTGGGATTTGGAGGCTTGGGAAAGACCACTCTCGCAAAGGTAGTGTTCAATGACACTGCTATTGAGGAATGTTTCACTTTGAAGATGTGGGTGTGTGTCTCTAATGATTTCGAACTTAGGAATGTGCTTATTAAAATCCTAAACTCTGCTCCTAACCCCACCAATGAGAAGTTCAAAAATTTAGACACGGATCAACTTCAAATTCGTTTGAGAAGTAGCCTTCAACGTGAGAAGTTCTTGCTCGTCTTAGACGATGTCTGGAACGAGGATCGTGTTAAATGGGATGAGTTGAAGGAAATCATAGAGATGGTAGGTAACAAAGGAAGTAAAATCTTGGTGACTACTCGTAGTCACTCAATTAATGCCATGATGCGCACTAAATCCTCTAACTCTTACATTCTAAAAGGCCTTTCTGAGGAGGATTCCATGTCTCTGTTTGTCAAATCTGCTTTTGATGATGGAGAAGGGAAAAACCATCCAGAGCTAATGGAGATTGGGAGACAAATTGTGAGAAAATGTGGAGGAATACCATTGGCGGTGAGAACCTTAGGAAGCTCACTGTTCTCAAGGGTGGATCGAAAAGAGTGGGAGAATATAAGAGATAATGAAATTTGGAACTTAAAACAAAATGAAAATGATATTTTGCCTGCTCTTGAGTTAAGTTATGATCAACTACCTTCGCATTTGAAACGATGTTTTGCTTGCTTCTCTCTTACCTCGAAGGACTTTGATGTTTCTAGTTCTTACGTTGCTCTGCTGTGGGAGGCACTTGGTTTTCTTTCCCCACCAAAGCAAAATGAAACAACACATGATGTTGCTAATGAATATCTGCGTGAGCTATGGTCAAGATCTTTTCTCACAGATTTTCTTGACATGGGGAGCACATGCAGATTTAAATTACATGATTTAGTCCGTGATCTTGCAGTGTACGTAGCCAAAGGTGAGTTTCAAATATTGTATCCCCACAGTACAAGTATATCTGAGCATGCCCAACACTTGTCATTCATTGAAAATGATACGCTTGGCCAAGATCTCGTTCCCATAGGCGCAAGAACTATAATTTTTCCCATGGCAGCTACTAATGATGCTTTCTTGAATACGTTGGTGTTAAGGTGCAAATACCTCAGAGTTCTAGACTTGAGTTATTCTGAATACGAGAGTTTGCCTAGCTGCATTGGAAAGTTGAAACATTTAAGATATCTCAATCTTTCAGGTAATAAAAAACTTAAGGAACTCCCAGATTCCGTATGCAAACTCCAAAATTTGCAAACTTTGGACCTAAGAGGTTGCATAAAGCTGCAAAAACTGCCCAAAGGAATAAGAAAGTTAGTCAGCCTTCGTCGGCTGCTTGTAACCACTAGGCAACCAGATTTTCCAGACAAAGAGATTTCAAAATTGGCTTCTATAGAAACAGTAAAACTTTATTCTTGTGATAATTTGGAGTCATTGTTCCAAGCTATACAACCTAGAAGTCTTAAGTTTTTGCATCTTTCTGGTTGTGGGGGTTTAAAGTCTCTGTCCTTTCATGTCATTACAAATTTAGAGAGTTTGGTTATCTTCAAATGCAGTAAGATGGAATTGTCAATGGGCCTTAGCAACCTTAATTCCATTCCTGATTCAAGGTTAAAATTACTTGTTCTTCAAAGTTTGCCACAGTTGGTCACTTTGCCTGAGTGGTTGCATGGATCTGTGAACACACTGCATTCCTTGTTACTTGTTGACTGCAACAATCTTGAGGAGCTTCCTGAGTGGCTGTCAACTTTGACCTCTCTCAAACTACTTATAATTGAACATTGTCCAAGGCTGATCTCACTCCCTGATAGCACGCATCACCTCCGAAACCTTGAACATTTGGAAATCAATGATTGTCCTGAATTATGCAAAAGATGTCAGCCAGGAGTTGGACTGGATTGGCAAAAAATATCCCACATCAAACAAGTTATCATTGGTGAACCAGAAGAGTAG 2553 0.4101 MAESLIVAVAESLITKLASRAVEQASLTLGVYQELQQMKKTMALVKAFLLDAEQKKQQNNALSEWLRQIRQVFAHAEDIVDNFECEVLRKHVVSSHGSFCRKVCRLLSTSNPVVYRYRMGREIKGIKKQLEKVATDGHMFGLQSSDKDTKVLHAREMTHSHVNVSNVVGREHDKQKIIELLLQDDHHDRSLSVISIVGFGGLGKTTLAKVVFNDTAIEECFTLKMWVCVSNDFELRNVLIKILNSAPNPTNEKFKNLDTDQLQIRLRSSLQREKFLLVLDDVWNEDRVKWDELKEIIEMVGNKGSKILVTTRSHSINAMMRTKSSNSYILKGLSEEDSMSLFVKSAFDDGEGKNHPELMEIGRQIVRKCGGIPLAVRTLGSSLFSRVDRKEWENIRDNEIWNLKQNENDILPALELSYDQLPSHLKRCFACFSLTSKDFDVSSSYVALLWEALGFLSPPKQNETTHDVANEYLRELWSRSFLTDFLDMGSTCRFKLHDLVRDLAVYVAKGEFQILYPHSTSISEHAQHLSFIENDTLGQDLVPIGARTIIFPMAATNDAFLNTLVLRCKYLRVLDLSYSEYESLPSCIGKLKHLRYLNLSGNKKLKELPDSVCKLQNLQTLDLRGCIKLQKLPKGIRKLVSLRRLLVTTRQPDFPDKEISKLASIETVKLYSCDNLESLFQAIQPRSLKFLHLSGCGGLKSLSFHVITNLESLVIFKCSKMELSMGLSNLNSIPDSRLKLLVLQSLPQLVTLPEWLHGSVNTLHSLLLVDCNNLEELPEWLSTLTSLKLLIIEHCPRLISLPDSTHHLRNLEHLEINDCPELCKRCQPGVGLDWQKISHIKQVIIGEPEE 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00385 850 Gene3D Ribonuclease Inhibitor 557 684 IPR032675 -
Vimu3g00385 850 PRINTS Disease resistance protein signature 193 208 - -
Vimu3g00385 850 PRINTS Disease resistance protein signature 369 383 - -
Vimu3g00385 850 PRINTS Disease resistance protein signature 613 629 - -
Vimu3g00385 850 PRINTS Disease resistance protein signature 269 283 - -
Vimu3g00385 850 Pfam Rx N-terminal domain 10 97 IPR041118 -
Vimu3g00385 850 Gene3D Ribonuclease Inhibitor 686 829 IPR032675 -
Vimu3g00385 850 Gene3D - 423 505 IPR036388 -
Vimu3g00385 850 Gene3D - 148 326 IPR027417 -
Vimu3g00385 850 PANTHER DISEASE RESISTANCE PROTEIN RP 38 750 IPR044974 GO:0006952
Vimu3g00385 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 431 IPR027417 -
Vimu3g00385 850 CDD RX-CC_like 8 134 IPR038005 -
Vimu3g00385 850 Pfam NB-ARC domain 171 419 IPR002182 GO:0043531
Vimu3g00385 850 Gene3D - 10 132 - -
Vimu3g00385 850 Gene3D - 332 422 IPR042197 -
Vimu3g00385 850 FunFam Probable disease resistance protein At1g61300 149 325 - -
Vimu3g00385 850 SUPERFAMILY L domain-like 495 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00385 Vimu-Chr3 3688594 3691146 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00385 176 822 WRKY Transcription Factor Family AT5G45050 24.168 1.65e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00385 - - gmx:100780033 1305.04