Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00383 ATGGCTGAGACAGATCAAGCAAGTGTTCTCCGACAACATGAAAAACAGGAAATACTAAAGCTTTTACTACAACATGATCATGATGGACATGACAAAAGTCTCTCTGTTGTTTCCATTCTGGGATTCGGTGGTTTGGGAAAGACCACACTAGCAAAGTTGGTGTTCAATGATACCACCATCGACGAGTGTTTCCCATTGAAGATGTGGGTGTGTGTCTCTGGTGATTTTGAGCTTAGGAATGTGCTTATTAAGATCCTCAATTCTGCTCTAAACCCAACTAACGAAAACTTCAAAAACATTGAGACTGAGCAGCTTCAAAATCGTTTGAGAAATACACTTCAACGCCAGAAGTTCTTGCTTGTGCTGGATGATGTGTGGAACGAGTATCAAGCTAGATGGGATGATTTGAAGGAAATACTAGATGTAGGTGCTGAAGGGTGTAAAATCTTAGTGACAACTCGTAGCCACTTGACAGCTACCATGATGTGCACCAAATACTCCAATTCTTACCATCTAGAACGCCTTTCTGAAGATGATTCCTTCTTTTTATTTGTCAAAACGGCTTTTAAAGAAGGGGAAGAAGAAAGATATCCACAGTTATTGGAGATTGGGAAGGAAATTGTGATCAAGTGTGGAGGAATACCATTGGCAGTGAAAACTTTAGCGAGTTCACTGTTCTCTGTGGTTGGTAAAAGCAAGTGGGAGGCTATGAGAGGCGATAAGATTTGGAATTTGCCACAAAAAGAAAAGGACATTTTGCCTGCTCTTGAGATAAGTTACAATCAACTGCCTTCCCATTTGAAACCCTGTTTTGTTTGCTTCTCCCTTTTCTGTGAGGGTTCTGAATTTTTTAGCTTTTATGTTGCTAAGTTGTGGGAGGCACTTGGTTTTTTTCCACCACCAAAGGAAAATGAGACAATGCATGATGTTTCCATTCAATTTCTGCGTGAGCTGTGGTCAAGATCTTTTCTCACAGGTTTCATTGAATTAAGCCATGGTTACAGTTTTAAATTACATGATTTAGTGCATGATCTTTCTATGTATGCTGCCAAAGGTGAGTTTCAGACAATATACCCCCGCAGTTCAAAAATATCTCCCAATGCTCGACATTTGGCATTCAGTGATAATATTCTGCTAGACCAAGCTGTCATTCCCACAGGTATGAGAACTATAATTTTTCCTGATGAAGCCACCAATGAAGCTTTCTTGAACAAATTGGTGTCAAGGTGCAAATACTTGAGGTTTTTGGAACTGAGTAACTCTATGTACGAGAGTTTACCTCCTTCCATTGGAAAGTTGAAACACTTAAGATATCTCAGTCTCTTTGGGAATAAAAACCTTAAGGGACTTCCTCGCTCAGTTTGTAACCTGCAAAATTTGGAAACTTTGAACCTTAATCAATGCACAGAGCTACAAGAATTGCCCAAAGGAATAAGCAAACTTATCAGCCTACGTCAGTTGCATACAACCACAAGGCAACTTCATTTTCCGGACCAAGAAATCTCAACTTTGACTTCTTTAGAGACTCTAACATTCAACTCTTGTGATAATTTGGAGTCATTGTTGAAAGGGATACAACTTTCTAGTCTTAAAAATTTGTCTTTGCATGACTGCGGGAAACTGAAATCTGTGTCCTCTCATGTCATAACAAATTTGGAGAATTTGGTTATCGAAAATTGTTGTGAGTTGGAATTGTCAATGAGCTTTGGCAACCAAATCCCTGATTTAATGTTAAAGTCTCTTGCTTTTAAAAGTTTGCAACAGTTGGTCACTTTGCCTCGGTGGTTGCAAGGATCTGTGAACAAACTACACTCCTTGGTAATTGCTAACTGCAACAATCTTAAGGAGCTTCCTGAGTGGCTTTCTTCTATGATTTGTCTCAAACTGCTTGTAATTGAATACTGTTCATCCCTGCAGTCACTCCCTGATAACCTCAAAAATCTTGAAAATTTACTCATTAATAGCTGTCCTGAATTATGCAAAAGATACCAGCCGGGGGTTGGACAGGATTACGACAAAATATCTCACATCCAAAAAGTTTTTGTTGGTGAATTGGAAGAGTGA 2064 0.392 MAETDQASVLRQHEKQEILKLLLQHDHDGHDKSLSVVSILGFGGLGKTTLAKLVFNDTTIDECFPLKMWVCVSGDFELRNVLIKILNSALNPTNENFKNIETEQLQNRLRNTLQRQKFLLVLDDVWNEYQARWDDLKEILDVGAEGCKILVTTRSHLTATMMCTKYSNSYHLERLSEDDSFFLFVKTAFKEGEEERYPQLLEIGKEIVIKCGGIPLAVKTLASSLFSVVGKSKWEAMRGDKIWNLPQKEKDILPALEISYNQLPSHLKPCFVCFSLFCEGSEFFSFYVAKLWEALGFFPPPKENETMHDVSIQFLRELWSRSFLTGFIELSHGYSFKLHDLVHDLSMYAAKGEFQTIYPRSSKISPNARHLAFSDNILLDQAVIPTGMRTIIFPDEATNEAFLNKLVSRCKYLRFLELSNSMYESLPPSIGKLKHLRYLSLFGNKNLKGLPRSVCNLQNLETLNLNQCTELQELPKGISKLISLRQLHTTTRQLHFPDQEISTLTSLETLTFNSCDNLESLLKGIQLSSLKNLSLHDCGKLKSVSSHVITNLENLVIENCCELELSMSFGNQIPDLMLKSLAFKSLQQLVTLPRWLQGSVNKLHSLVIANCNNLKELPEWLSSMICLKLLVIEYCSSLQSLPDNLKNLENLLINSCPELCKRYQPGVGQDYDKISHIQKVFVGELEE 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00383 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 273 IPR027417 -
Vimu3g00383 687 SUPERFAMILY L domain-like 330 663 - -
Vimu3g00383 687 Gene3D Ribonuclease Inhibitor 353 669 IPR032675 -
Vimu3g00383 687 PANTHER DISEASE RESISTANCE PROTEIN RP 14 651 IPR044974 GO:0006952
Vimu3g00383 687 Pfam NB-ARC domain 17 238 IPR002182 GO:0043531
Vimu3g00383 687 PRINTS Disease resistance protein signature 36 51 - -
Vimu3g00383 687 PRINTS Disease resistance protein signature 112 126 - -
Vimu3g00383 687 PRINTS Disease resistance protein signature 455 471 - -
Vimu3g00383 687 PRINTS Disease resistance protein signature 211 225 - -
Vimu3g00383 687 Gene3D - 254 348 IPR036388 -
Vimu3g00383 687 Gene3D - 2 167 IPR027417 -
Vimu3g00383 687 FunFam Probable disease resistance protein At1g61300 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00383 Vimu-Chr3 3654357 3656420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00383 34 648 WRKY Transcription Factor Family AT5G45050 23.731 2.23e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00383 - - gmx:100780033 873.233