Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00381 ATGAATGAACCAAATGAAAAAAATCTTTGCATGAAGTGTAATAAAGGTGGCCAATTATTGGCTTGTAAAACAACTACTTGCCCAATGATGGTGCATGAAAACTGTCTAGGGGCCTCTGCACAATTCAATGCAAAGGGCGACTTTTTTTGCCCATTTTGCACATATTCTCGTACTATTTCAGAATATATTGAAGCCAAGAAAGAAGCTTCCTTAGCAAGGAAGGAATTAGCCATCTTTATTAGTAAAGAGAAGATCATGTTGATGAGCATGCAAATGAAGCCAATAATCTTCAGTTTGGAAGAAGTCAGCAACAAGCCCATATATCGTGTACCTATTCATCATTCAGAGAAAAGGAAAATATAA 363 0.3636 MNEPNEKNLCMKCNKGGQLLACKTTTCPMMVHENCLGASAQFNAKGDFFCPFCTYSRTISEYIEAKKEASLARKELAIFISKEKIMLMSMQMKPIIFSLEEVSNKPIYRVPIHHSEKRKI 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00381 120 SMART PHD_3 9 54 IPR001965 -
Vimu3g00381 120 ProSitePatterns Zinc finger PHD-type signature. 10 53 IPR019786 -
Vimu3g00381 120 ProSiteProfiles Zinc finger PHD-type profile. 7 56 IPR019787 -
Vimu3g00381 120 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 84 - -
Vimu3g00381 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 95 IPR013083 -
Vimu3g00381 120 SUPERFAMILY FYVE/PHD zinc finger 4 58 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00381 10 57 PHD Transcription Factor Family AT5G12400 35.417 3.94e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00381 - - var:108326175 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00381 3 3628690 3629194 Vimu3g00381 3 3628690 3629194 ECH