Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00380 ATGACAGAATGGGATGATCACGTCCCCCTTTCTCCAGTGGAAATGATTGCAAGCCCAGCATTTCTGGCTAATCAATTAAGACGAAAATATATTCCGTGGACAGCTGAGGAGGAAGAGATGCTAAGGGAAGGAGTACAGAAGTTTGGTTTCAATGACCCAAAGAAATGGAAAAACATTTTGGCATTTGGTTCTCATGTGTTTCAGAAAGTTGGTAAGCGCCGTACACCAATAGACCTGAAGGATAAATGGAAGAACATAGGAAAAGCATGGGATAAAGGTGAAGTAGGTCTCGAGAATCAGGCTGTGTATAGCAGGAAAACATGTGAAATGTGGCTCGTGATATTGGAAAATGTTGAGGTGGATCTTTCTGATAATCCTTCCGTTGAGGTCAAATTCGGCTAA 402 0.4204 MTEWDDHVPLSPVEMIASPAFLANQLRRKYIPWTAEEEEMLREGVQKFGFNDPKKWKNILAFGSHVFQKVGKRRTPIDLKDKWKNIGKAWDKGEVGLENQAVYSRKTCEMWLVILENVEVDLSDNPSVEVKFG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00380 133 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 24 88 - -
Vimu3g00380 133 ProSiteProfiles Myb-like domain profile. 32 87 IPR001005 -
Vimu3g00380 133 SUPERFAMILY Homeodomain-like 27 88 IPR009057 -
Vimu3g00380 133 SMART sant 29 89 IPR001005 -
Vimu3g00380 133 Pfam Myb-like DNA-binding domain 33 86 - -
Vimu3g00380 133 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Vimu3g00380 133 CDD SANT_TRF 31 88 - -
Vimu3g00380 133 Gene3D - 23 89 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00380 33 101 Single Myb Histone (SMH) Gene Family AT1G72740 46.377 1.38e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu3g00380 Myb_DNA-binding 5.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00380 - - var:108326175 141.739