Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00379 ATGGAAGGTTGCAAAAACTCCCCTCTAAAGCCATGGAAGAAAGGCCCAACAAGAGGCAAAGGTGGCCCCCAAAATGCCTCCTGTGAGTATAGAGGTGTCAGACAAAGAACATGGGGCAAATGGGTCGCTGAGATTAGAGAGCCTAAGAAGAGATCAAGACTCTGGCTTGGCTCCTTTGCCACAGCAGAAGAAGCTGCTTTCGCCTATGATCAAGCTGCAAGGAGACTCTATGGTCCTGATGCTTACCTCAACCTCCCCCACATGCAACCAAACCTCATCAACTCCACCACCAAATCTCAAAACTTCAAGTGGTTCCCTTCCAACAACTTCATCTCCATGTTCCCCTCACGTGGACTTCTCAACCTCAATGCTCAACCAAGTCTCCATGTCATCCACCAGAGGCTGCAACAGCTCAAGCACAATGGGCTGTCTGCACCAACTCCACAACCACATTCAAAGGTGGCAGAACTTGACAACTTGGTCAGCCAAAACCATTCAGAGATTCTCCCTCCACTGCCCCAAGATTCTCAAGCTTCACCACAAAAACTAACAGCTGAGAAACCCGAGATAGACCTGCTTGAGTTTCTTCAACAGATGGGAATACTAAAAGATGAAAGAGAGGCAGAGAAAACTGACAGCTCAGGAAGTTCAGCAGTGTCAGAAGCTGCATCACGAGATGAGAGTGAACAACCAGGAGTGTTTTCTGACATGAGTAGTGTTAACTGGGAGGAACTGATTGAGATGCATGACCATGAAGTTGTGTGTAACTATCTTGCATCCGAAGAAATTCAGTTTGAAGCATATGACACAAACGATGACCTTAGTTTCTCCACTTCCATTTGGAACTACTGA 852 0.4683 MEGCKNSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRSRLWLGSFATAEEAAFAYDQAARRLYGPDAYLNLPHMQPNLINSTTKSQNFKWFPSNNFISMFPSRGLLNLNAQPSLHVIHQRLQQLKHNGLSAPTPQPHSKVAELDNLVSQNHSEILPPLPQDSQASPQKLTAEKPEIDLLEFLQQMGILKDEREAEKTDSSGSSAVSEAASRDESEQPGVFSDMSSVNWEELIEMHDHEVVCNYLASEEIQFEAYDTNDDLSFSTSIWNY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00379 283 MobiDBLite consensus disorder prediction 205 234 - -
Vimu3g00379 283 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Vimu3g00379 283 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Vimu3g00379 283 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vimu3g00379 283 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vimu3g00379 283 MobiDBLite consensus disorder prediction 1 27 - -
Vimu3g00379 283 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Vimu3g00379 283 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vimu3g00379 283 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vimu3g00379 283 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vimu3g00379 283 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Vimu3g00379 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00379 Vimu-Chr3 3621922 3622773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00379 5 283 AP2-EREBP Transcription Factor Family AT3G57600 53.979 4.94e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu3g00379 AP2 5.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00379 - - gmx:100808363 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00379 3 3621922 3622773 Vimu3g00379 3 3621922 3622773 ECH
Vimu6g03008 6 26587058 26588669 Vimu3g00379 3 3621922 3622773 PCT