Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00372 ATGTATCTGTATATAAAAGCAAACCTACATAGCCTTCTACTGTTCCCACTCTCTCCTCAAACACAAACCTTTTTCCATTCCACCATGGCAGACCCTTACTCCAATTTCTTCTCACCACCTTTCTTCCACTACCCTTCTCCAAATCCTTCCCCTCACCACCATCATCCATATCCTCACAACTTCATCAACCAAACCACCACCACCAACATCACCCACAACACTTTTTTCCACTTCCAACATCACCACCACTTTCAAACCACTACCACCACCTCCTTTTCTTCTTCTTCACCCCCTTCTCCTCCCTTGAGAGAGGCTCTTCCTCTTCTCACCCTCAGCCCAAAAAATTATGACCAACCGCAGGAGGACTACCAGGATCAGGATCAGGATCAGCTTTCAACTGCCATGGATGTCGAAGACAACTTTAACAGGACCCTCCATAGTCCCAAAGAAGAGGACCAAGAAGATGATGCTCATCACAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGCGCTGCTGAGATTGCTTCTGTTCTTTCTTCTTCTTGTGCCACAGACAAAGACCAACAACAAGGAGGAGATTGTGATAATAATGGGATCGATGATTCTTCTTCAGGGTTCTTGTCGAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGACCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGTTGTTCCCCAGGATGCAGGAACAACATTGATCATCCAAGAGCAAAGCCTCTTAAAGATTTCAGAACTCTCCAAACCCACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAGGCTTTTGCAGTGAGAGGTGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTACTGCATCTGTGGCTCTGATTTCAAACACAAGAGGTCTCTTATAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATCGATGGCTTTGAAGAGGAAGAAGAGCCTGCATCTGAAGTAGAACAAGACAATGACTAA 1179 0.458 MYLYIKANLHSLLLFPLSPQTQTFFHSTMADPYSNFFSPPFFHYPSPNPSPHHHHPYPHNFINQTTTTNITHNTFFHFQHHHHFQTTTTTSFSSSSPPSPPLREALPLLTLSPKNYDQPQEDYQDQDQDQLSTAMDVEDNFNRTLHSPKEEDQEDDAHHSVTVALHIGLPSPSAAEIASVLSSSCATDKDQQQGGDCDNNGIDDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLIDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00372 392 PANTHER ZINC FINGER PROTEIN WIP2 67 390 IPR043584 GO:0003700|GO:0010468
Vimu3g00372 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 318 338 IPR013087 -
Vimu3g00372 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Vimu3g00372 392 SUPERFAMILY beta-beta-alpha zinc fingers 300 338 IPR036236 -
Vimu3g00372 392 MobiDBLite consensus disorder prediction 185 204 - -
Vimu3g00372 392 FunFam Zinc finger protein WIP2 287 369 - -
Vimu3g00372 392 Gene3D Classic Zinc Finger 279 365 - -
Vimu3g00372 392 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Vimu3g00372 392 Gene3D Classic Zinc Finger 233 256 - -
Vimu3g00372 392 SMART c2h2final6 234 256 IPR013087 -
Vimu3g00372 392 SMART c2h2final6 318 338 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00372 Vimu-Chr3 3542631 3544827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00372 29 392 C2H2 Transcription Factor Family AT3G57670 61.578 2.72e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g00372 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00372 - - gmx:100783088 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00372 3 3542631 3544827 Vimu3g00372 3 3542631 3544827 ECH
Vimu3g00372 3 3542631 3544827 Vimu4g00453 4 3286304 3288174 ECH
Vimu6g03002 6 26512269 26514577 Vimu3g00372 3 3542631 3544827 PCT