Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00369 TTTCTCGTCTGCAGCATTTCTTTACTTGACTTTGTTGTCCTTCAACTCTCTCTCTTCTCTCTCAACTCTGTTTTGTTAATGATATATATTCAAGCTGTAGGTTTCTGTCCGTTTATAGCATTTGGAAGAAGCAAAACGCTTCTTTTGGAGGTTTCCATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGGGCACTTGGTGCAACTTTTCTTGTTCTCCACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGTCCAAACAAGCTGACAAATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATTGCATATGCATTATAACCGGCTATTGCGAAGGGGGTGACATGGCTGCAAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACTCAATTGCTACTAGCTGTGGACTACCTTCACTCCAATAGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATCCTCAAGACCTCACTTCTCCGGCTTTTGGAACTCTAAACTACATGTGTCCCGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCGTTGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAGCACAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCTTCATCTATTTATTTGCCAGTACATCTTATAAATAGTAACTCTCCAAAGGATAAAACTAAAAACAAATCTAGTGGTAGCAAAGACCATTGGGATAAGGAAGCAGAATTAGCAGGATTAGTAAATCGGTTGGACCGAATTTATCCATTGGAGGGAAATGGAGATGTACAGACACGGAACCAGCATAATGAGGACAAGCTAGCAATGCCAACCAAAGACAAGGTTGAGACCAAAATGGTTGATTCTACCAGCTATACTCAGGAATTTTCTACAAGTATTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACTGTTTGCAGTGTGAGCAAGGAAGGAGACTTTAAAAATAGATTTGCAAGGGACACAGCTGACAGTGAGATCACTTCAAAAAGTACAATAGATTGTGTGCATGAAGAACAAGGACTTACTACCCATAAGTCATACGCATTTGACATAAATACAGCAATTAAAAATGTTGAAGATATTCTTTCCAATGAAGATCTCAATACAGATGAAGCACTCAGCGAAGGTGCCAAAACTGGGGATTACAGTAAATCAACAATATCCAGTGAAGGCAACGAGGGTAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGATTTACGGTGGACCGTTTTCGGAAGTCGGATGTGGTTGACCCAAGCACAGTATCTACAGAAGTTGAAGATAATTTTTCCAGTGATGGTTTTGATAAAATGGAAACAGAGTGGGAAAATGACAAACTTGTGGACTCCAAAAAATCAATAGTGTTCACTGAAAACAGCAAAGGCAATGATAAAGATGTGTCCATTGATGAGATCACTTCAAAGAGTATTCTAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTCCAAAGTCAGATGTGATCGACACGAATGCAGTGGCTACAAAATTTGAAGATAATTTTTGCAATGAAGCATTTGATGAAACTGGAACAGAGACAAAAAATGGCAGACAGGACTCCAGAATATTAGGGTACATTGATGACAGCAGATTGAAGAGTACACTCGATTCTATGCATGAAGAGAAATGGTTTATAGCTGAACCTGCTCAAAAGTTAGATCTTGTTGACATAAAAGCCACAGCTTCAAAAGATGTGGACAGAGTTTCTAATGAAGGTTCTGGTGAAGCTGAAGCACAGAGTGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTATGATAACAGCAACGGTAATGATGAAGATGGATCTGGTGATGAGATCACATCGAAGAGTATGCTAGAATCTGTAGGTGAAGAACAAGGACTCACTGCTGAGCATTTCCAGACGTCTGATGCAATAGACATAACTATAGTGACTACAGAATTTGAAGATAAACTTTCCAATGAAGGTTTTGATAAAACTGAAACACAGGAGAAAGATGCTAAACCTGAGGACTCCCTTAAATCTTTGTCCAGTGAAGGCAGCAGCCGCATTGATAAAGACGGGTCCATTGATGAGGAAAGGTCATCATCCCCACTGGCACAACCTGTTAGGGTTGAACATGACACTGAAACTGGAAGCAGCTTGAAGGAAGATGAAAAACCTGAAGGATTTAAAGAGGGCTCACACATGAACAGCTTGACTTCTGATACTAAGGATACGCATCCAGGTAAGGATGAAAACAGAGAAGACACACACACAATCAGTTGCTCAACGTGTAAAGAAGACAGCAATGCTGTTGGGACCCAGAAGCAAGCAAATGACATTTCATTAATGAATCGTATTTCAAGAGGCAGTAATGCTTCTTGCCAGCAAAGAGCCGATGCTTTGGAATCTCTACTTGAGTTATGTGCACAGCTACTTCAGCAAGGAAACCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCAGTGTCTTCCAGAGAAACAGCGATATTGCTAACAAAAAGCCTCATGGCGTCCCAAAAACTTAATCCTGAAACGTAG 3003 0.4033 FLVCSISLLDFVVLQLSLFSLNSVLLMIYIQAVGFCPFIAFGRSKTLLLEVSMESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLSKQADKSKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDCICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNPQDLTSPAFGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSGSKDHWDKEAELAGLVNRLDRIYPLEGNGDVQTRNQHNEDKLAMPTKDKVETKMVDSTSYTQEFSTSISGSKDGSTTSESTVCSVSKEGDFKNRFARDTADSEITSKSTIDCVHEEQGLTTHKSYAFDINTAIKNVEDILSNEDLNTDEALSEGAKTGDYSKSTISSEGNEGNDKDESIDEIMSKSTLDSVHEEQGFTVDRFRKSDVVDPSTVSTEVEDNFSSDGFDKMETEWENDKLVDSKKSIVFTENSKGNDKDVSIDEITSKSILESVHDEQEFTAEHFPKSDVIDTNAVATKFEDNFCNEAFDETGTETKNGRQDSRILGYIDDSRLKSTLDSMHEEKWFIAEPAQKLDLVDIKATASKDVDRVSNEGSGEAEAQSEDAKLECSSKSIISYDNSNGNDEDGSGDEITSKSMLESVGEEQGLTAEHFQTSDAIDITIVTTEFEDKLSNEGFDKTETQEKDAKPEDSLKSLSSEGSSRIDKDGSIDEERSSSPLAQPVRVEHDTETGSSLKEDEKPEGFKEGSHMNSLTSDTKDTHPGKDENREDTHTISCSTCKEDSNAVGTQKQANDISLMNRISRGSNASCQQRADALESLLELCAQLLQQGNLEELAAVLRPFGEDAVSVSSRETAILLTKSLMASQKLNPET 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00369 1000 ProSiteProfiles Protein kinase domain profile. 62 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00369 1000 SUPERFAMILY Protein kinase-like (PK-like) 58 337 IPR011009 -
Vimu3g00369 1000 Pfam Protein kinase domain 62 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00369 1000 Gene3D Transferase(Phosphotransferase) domain 1 144 367 - -
Vimu3g00369 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Vimu3g00369 1000 Gene3D Phosphorylase Kinase; domain 1 43 141 - -
Vimu3g00369 1000 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 59 949 - -
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 886 903 - -
Vimu3g00369 1000 FunFam Serine/threonine-protein kinase Nek6 47 141 - -
Vimu3g00369 1000 SMART serkin_6 62 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 714 903 - -
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 714 735 - -
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 799 821 - -
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 857 874 - -
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 736 790 - -
Vimu3g00369 1000 CDD STKc_Nek 61 316 - -
Vimu3g00369 1000 MobiDBLite consensus disorder prediction 501 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00369 Vimu-Chr3 3502714 3510810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00369 66 345 MAP Kinase Kinase Kinase AT1G09000 28.763 1.33e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu3g00369 Pkinase 1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00369 K08857 - gmx:100818558 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00369 3 3502714 3510810 Vimu3g00369 3 3502714 3510810 ECH
Vimu6g03001 6 26459257 26464038 Vimu3g00369 3 3502714 3510810 PCT