Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00367 ATGGGGAAGAAGAGAAGTAAGGTTTTGGAGGATGATGAGGAATTCGAAACCCACTCTTCCGATCAGAACGAACACACCCTCTACCAGGTTCTTGGTGTGGAGAGAACAGCGTCTCAACAGGAAATAAAGAAGGCATACCACAAGTTGGCATTAAAGCTGCATCCTGATAAAAACCCCGGTGATGATGAAGCTAAAGCTAAGTTTCAGCAATTGCAACATGTTATCTCAATTCTTGGTGATGAAGAAAAGCGGGCTGTATATGATCAGACTGGTTGTATTGATGACGCCGAGCTTGCAGGGGATGTTGTTCAGAATCTCAAAGAATATTTCAGAGCAATGTACAAAAAGGTCACTGAAACTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAAAAATGATTTGATTGACCTCTACAAGAAGTACAAGGGTAAAATGAATAGCTTGATATCTGGTAAACTTCCCTCCCTTTGCAGGTTATTCCATTCAATGCTTTGTTCAGATCCTAAACTTGATTCACACCGATTCAAGGATATTCTTGATGAGACTATAGCTGCTGGAGAACTAAAGGAAACAAAAGCCTACAAGAAATGGGCAAAGAAATTATCAGAAACCAAGCCACCTACTAGTCCAATAAGAAGGCGAGCACAATCATCAAAGAAACAATCAGAAATAGATCTGGGTGCCATCATATCACAGCGTCAACATGAGAGGAAAGACCGCCTTAATTCTATGTTCTCATCTCTAATTTCAAAGTATGGTGGGGATCAAATGCCAGAACCCTCTGAAGAGGAATTTGAAGCTGCACAGAGAAAACTGGAAAAACGTAGGTCCTCAAAAAAGTCAAAGCAAAGATAA 870 0.4057 MGKKRSKVLEDDEEFETHSSDQNEHTLYQVLGVERTASQQEIKKAYHKLALKLHPDKNPGDDEAKAKFQQLQHVISILGDEEKRAVYDQTGCIDDAELAGDVVQNLKEYFRAMYKKVTETDIEEFEANYRGSDSEKNDLIDLYKKYKGKMNSLISGKLPSLCRLFHSMLCSDPKLDSHRFKDILDETIAAGELKETKAYKKWAKKLSETKPPTSPIRRRAQSSKKQSEIDLGAIISQRQHERKDRLNSMFSSLISKYGGDQMPEPSEEEFEAAQRKLEKRRSSKKSKQR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00367 289 MobiDBLite consensus disorder prediction 1 21 - -
Vimu3g00367 289 CDD DnaJ 26 80 IPR001623 -
Vimu3g00367 289 MobiDBLite consensus disorder prediction 214 233 - -
Vimu3g00367 289 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 14 288 IPR042977 -
Vimu3g00367 289 Gene3D DnaJ domain 11 120 IPR036869 -
Vimu3g00367 289 PRINTS DnaJ domain signature 46 61 IPR001623 -
Vimu3g00367 289 PRINTS DnaJ domain signature 83 102 IPR001623 -
Vimu3g00367 289 PRINTS DnaJ domain signature 28 46 IPR001623 -
Vimu3g00367 289 PRINTS DnaJ domain signature 63 83 IPR001623 -
Vimu3g00367 289 Pfam DnaJ domain 27 88 IPR001623 -
Vimu3g00367 289 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g00367 289 SUPERFAMILY Chaperone J-domain 24 97 IPR036869 -
Vimu3g00367 289 SMART dnaj_3 25 83 IPR001623 -
Vimu3g00367 289 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Vimu3g00367 289 MobiDBLite consensus disorder prediction 205 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00367 Vimu-Chr3 3482740 3486019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00367 28 88 C2H2 Transcription Factor Family AT1G74250 42.424 9.49e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00367 K09529 - gmx:100781463 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00367 3 3482740 3486019 Vimu3g00367 3 3482740 3486019 ECH
Vimu6g02999 6 26453233 26455408 Vimu3g00367 3 3482740 3486019 PCT