Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00364 ATGGAACCCTCACAGCCACGTTACCCTAAACGTGGAACAAGTTCTCGAGGCTTGTGGAATCGTTCTTCTGTAACCCTAAATTTCACAAAAAATGAAGTTCTGATTCCTGTTCAAGGACCCCAATTTCCTTCAAACTTAACACCAATGGAACATGCACCACAACAAACCAGGGTGGTTGCCTCAGACACAATTGAGTTTGGAGTTCAAGAAGTTAAGCAAAAGCGATATCGTAAACGGAATTTCAAGAAAACAACCTCAATGTATCGAGGAGTGACAAGGTGTAAGGGACGTTTTGAATCTTTTGTGTGGGATAAGGACCTCAAAACAACTGGGAAGAGAGGAAAAACAGGTGGATTTAAGGATGAACTTGAAGCAGCAAGAGCTCACGATTTGATTGCCATTAAGATATGGGGCAAGGTTAGCAAGGATAATTCTGCTATTGATGGTTGTAATTCCTCCAGTGGTGTAGATGGAGCTTCACCTGAAGTGCAGGAAAACAATGTAGTTGGTGATGCATTGTCAAACCCTGAATCAACCACAATGCAATCAATGTTTGATGAGATTGGTCAACAATCTCAAGCAGCAACAACTTCACTAGACCAACATGAGAATGTTGCAGAGAACAAACTTCTGTATGCTGATCAGTTTGCATGGTTAGATTTTGACCTAAGTTCCTCTCTTTGGTCATATGATTTTGGCAGTGCACAAGTTCAGGACCATGCAGATGCTTTAGGCAATAATGCCCTAAATTGGGAGTCCCCAACAGTAGGAGCAGGAAATGGAAGTGTTGCTTCATCTGGGTCAATAATGGAGCCTGATACTCTGCAATTTGAAGAACAAAACCCTCATGTTGCATCTGTTCATAGGTATGAGCCTCTCCAGTATGGATTTGCCACAAGCAACCAGGATGAGAATGTGCTTCCTGACAACGATTGGGATATAACCCAATATCTGAATCTCGATTACTCTGACATGGATGATCACGAAACTTCTGATGATTGA 1002 0.4202 MEPSQPRYPKRGTSSRGLWNRSSVTLNFTKNEVLIPVQGPQFPSNLTPMEHAPQQTRVVASDTIEFGVQEVKQKRYRKRNFKKTTSMYRGVTRCKGRFESFVWDKDLKTTGKRGKTGGFKDELEAARAHDLIAIKIWGKVSKDNSAIDGCNSSSGVDGASPEVQENNVVGDALSNPESTTMQSMFDEIGQQSQAATTSLDQHENVAENKLLYADQFAWLDFDLSSSLWSYDFGSAQVQDHADALGNNALNWESPTVGAGNGSVASSGSIMEPDTLQFEEQNPHVASVHRYEPLQYGFATSNQDENVLPDNDWDITQYLNLDYSDMDDHETSDD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00364 333 Gene3D AP2/ERF domain 87 146 IPR036955 GO:0003700|GO:0006355
Vimu3g00364 333 ProSiteProfiles AP2/ERF domain profile. 87 146 IPR001471 GO:0003700|GO:0006355
Vimu3g00364 333 SUPERFAMILY DNA-binding domain 86 142 IPR016177 GO:0003677
Vimu3g00364 333 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 62 145 - -
Vimu3g00364 333 SMART rav1_2 87 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00364 Vimu-Chr3 3469084 3472267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00364 80 147 AP2-EREBP Transcription Factor Family AT5G57390 41.333 1.60e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00364 K09285 - gmx:102665149 249.98