Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00363 ATGTTTGCAGGTTGTCATAAAACAATGGAGTCTCACGATGAAACAGGATGCCAGGCTCCAGAAAGGCCAATTCTTTGCATTAACAATTGTGGCTTCTTTGGAAGGGCTTCCACCATGAATATGTGCTCCAAATGTTACAAAGACATGCTGTTGAAGCAGGAACAAGACAAACTTGCAGCAGCGTCGGTTGAGAACATTGTGAATGGCGGTTCTGGCTGCAGCGGGAAGCAGGCTGTGACTGCAGGTTCTGTGGATGTTCAAGTTGGAAATGTGGAGATGAAGACAGTCTCAGTTGAGATTTCTGGAGATTCATCCTCCGGTCAGAATTTGGAGATGAAAGCTAAGACAGGTCCCAGCAGATGCGCCACTTGCCGGAAGCGTGTTGGATTAACCGGTTTCAGCTGCAAATGTGGGAACCTCTTTTGTGCAATGCACCGCTATTCTGACAAACACGATTGCCCCTTTGATTATCAGACTGTTGGTCGTGAGGCTATAGCTAAAGCCAACCCTGCAATTAAGGCTGATAAGCTTGATAAAATCTAG 543 0.4641 MFAGCHKTMESHDETGCQAPERPILCINNCGFFGRASTMNMCSKCYKDMLLKQEQDKLAAASVENIVNGGSGCSGKQAVTAGSVDVQVGNVEMKTVSVEISGDSSSGQNLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYQTVGREAIAKANPAIKADKLDKI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00363 180 ProSiteProfiles Zinc finger AN1-type profile. 115 161 IPR000058 GO:0008270
Vimu3g00363 180 Gene3D - 8 68 - -
Vimu3g00363 180 Gene3D - 97 176 IPR035896 -
Vimu3g00363 180 Pfam A20-like zinc finger 24 47 IPR002653 GO:0003677|GO:0008270
Vimu3g00363 180 SMART A20_3 23 47 IPR002653 GO:0003677|GO:0008270
Vimu3g00363 180 Pfam AN1-like Zinc finger 121 158 IPR000058 GO:0008270
Vimu3g00363 180 PANTHER AN1-TYPE ZINC FINGER PROTEIN 21 180 - -
Vimu3g00363 180 SMART AN1_Zf_4 121 158 IPR000058 GO:0008270
Vimu3g00363 180 ProSiteProfiles Zinc finger A20-type profile. 20 54 IPR002653 GO:0003677|GO:0008270
Vimu3g00363 180 FunFam Zinc finger AN1-type containing 6 95 176 - -
Vimu3g00363 180 SUPERFAMILY AN1-like Zinc finger 112 175 IPR035896 -
Vimu3g00363 180 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00363 Vimu-Chr3 3455448 3455990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00363 13 180 C2H2 Transcription Factor Family AT3G52800 42.604 3.91e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00363 - - gmx:100499995 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00363 3 3455448 3455990 Vimu3g00363 3 3455448 3455990 ECH
Vimu3g00363 3 3455448 3455990 Vimu5g02186 5 33174869 33178143 ECH