Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00350 ATGGATTCCCATACCCATCATCATCAGGATTACCAGCTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCGCTCTTTTCAAATCTCACTCCTTTTGTCAGCTACGGTGGTGACACTGCTGCTTCAAGTAGCTTCCGGGAGTTGGAAGAAAGCAGCAACCAAAAGTGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGTTATGGTGGGGGGTTGCCACCTCACTATCCGAGACATGGTTCTTCATCTGCTACTTCGAGTTCTTCTATGGAAGGGTCTTATGGGTTGGTTGGTTCAATGGGAATGGATCATGAAGCTCCAAATAAGGGCTTCGGGTCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATGTTTCATTCCAAAATGGGTTTGTCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTCAGTCCATGTATTAGCAGGTTGAAGAATCAGATTAACTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTCTCAGATCTCTGAAATAGGGAATGAAGACATTGAGACAACTAGTCCTGATGATAATACCAGTCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCTTATGGTTCTTGGAATGAGACTCCACAACTGTCAGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTGACAATGAAAAGATCTTTTCTGATGTTCAGAATGGAGAACCTGGAAACCAAGTTAATATATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACTATGGAGAAGTTGCTTCAGTTTCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGTAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAATATGGATAAGCAAACCAACACAGCAGACATGTTGGACTTAGCGGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTAGTGATAAACGGGCAAACTGCAAGTGTTCAAGCGTGCAAAAGGCAGATTCATAA 1140 0.4263 MDSHTHHHQDYQLHLHQNQPSSGLLRFRSAPSSLFSNLTPFVSYGGDTAASSSFRELEESSNQKCCSKDLSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGSYGLVGSMGMDHEAPNKGFGSSLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNQINFSPRNSSSLGMLSQISEIGNEDIETTSPDDNTSHGGNDTQHFGPGFPYGSWNETPQLSENLSGLKRGRSDNEKIFSDVQNGEPGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSDKRANCKCSSVQKADS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00350 379 MobiDBLite consensus disorder prediction 201 218 - -
Vimu3g00350 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 371 - -
Vimu3g00350 379 MobiDBLite consensus disorder prediction 201 225 - -
Vimu3g00350 379 FunFam Transcription factor bHLH130 family 306 375 - -
Vimu3g00350 379 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Vimu3g00350 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Vimu3g00350 379 SMART finulus 311 361 IPR011598 GO:0046983
Vimu3g00350 379 MobiDBLite consensus disorder prediction 76 102 - -
Vimu3g00350 379 Gene3D - 306 377 IPR036638 GO:0046983
Vimu3g00350 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 368 IPR036638 GO:0046983
Vimu3g00350 379 CDD bHLH_AtbHLH_like 310 363 IPR045239 -
Vimu3g00350 379 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00350 Vimu-Chr3 3345852 3348479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00350 14 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.354 7.32e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g00350 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00350 - - gmx:100819605 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00350 3 3345852 3348479 Vimu3g00350 3 3345852 3348479 ECH
Vimu6g02984 6 26328777 26329451 Vimu3g00350 3 3345852 3348479 PCT