Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00346 ATGAAAAAGAGGGTTGAAGAGATTCTGGAGAAGTTTGATGGGATGATGGAGAGGGTGATAAGGGAGCATATGGAGGAGAGACAGAGAAGAAAGGAGATAGGAGATGAAGAGGAAAATGTTAGGGATTTGCTTCACATTCTCTTAGACATTCATGAAGATGAGAGCAGGGAGATGAAGTTAACCAGAGAGAATGTAAAGGCTTTTATCTTGGACATATTGATGGCAGGAACGGATACATCGGCTATAACAATGGAGTGGGCGCTAGCGGAGTTAATAAGAAACCCTAAGGTGATGGAGAAAGCGAGAGAAGAGATAGATACAGTGACAGGAAATAACAGTAGAGTGATTGGAGAGTCAGATATTGTTAACCTTCCGTACATGCGAAGCATAGTGAAAGAAACCCTAAGGCTGCACCCGACAACGCCGATGATTGGAAGAGAGTCATCAGAGAAGATGGAGGTTTGTGGGTACGAGATTCGAGAAAAGACGTGGTTGCTTGTGAACTTGTGGTCGATGGGAAGGGACCCTAAGGTTTGGGAAGAGGCTCTTGAGTTCAGGCCAGAGAGGTTCATGGGAGAGGAGAAGGAGTTTGATTTAAGAGGACAGAAGTTTGAACTGATGCCATTTGGGACAGGGAGAAGGGTGTGTCCTGGTGCTTCACTTGCACTTCAGGTTGTGACCTCCAACCTTGCTGCTATGGTTCAATGCTTTGATTGGAAGGTTGAAGGGAGTGTTAGCATGGAAGAGAAACCATCCATGACCCTTCCAAGGGCACATCCTTTGTTCTGTGTCCCTGTGCCTCGATTCTCATTTTCCTTTTAG 822 0.4562 MKKRVEEILEKFDGMMERVIREHMEERQRRKEIGDEEENVRDLLHILLDIHEDESREMKLTRENVKAFILDILMAGTDTSAITMEWALAELIRNPKVMEKAREEIDTVTGNNSRVIGESDIVNLPYMRSIVKETLRLHPTTPMIGRESSEKMEVCGYEIREKTWLLVNLWSMGRDPKVWEEALEFRPERFMGEEKEFDLRGQKFELMPFGTGRRVCPGASLALQVVTSNLAAMVQCFDWKVEGSVSMEEKPSMTLPRAHPLFCVPVPRFSFSF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00346 273 PRINTS P450 superfamily signature 129 140 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS P450 superfamily signature 216 227 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS P450 superfamily signature 207 216 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS P450 superfamily signature 75 92 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PANTHER CYTOCHROME P450 98A9 2 268 - -
Vimu3g00346 273 Pfam Cytochrome P450 1 251 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 FunFam Predicted protein 73 263 - -
Vimu3g00346 273 PRINTS E-class P450 group I signature 64 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS E-class P450 group I signature 206 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS E-class P450 group I signature 216 239 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS E-class P450 group I signature 168 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS E-class P450 group I signature 128 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 PRINTS E-class P450 group I signature 84 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 209 218 IPR017972 GO:0005506|GO:0016705
Vimu3g00346 273 Gene3D Cytochrome P450 1 268 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g00346 273 SUPERFAMILY Cytochrome P450 3 268 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00346 Vimu-Chr3 3309774 3310832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00346 1 268 Cytochrome P450 AT5G06900 50.373 2.72e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00346 K24188 - gmx:100805931 399.438