Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00343 ATGAGGCCACCACCAACTCTCAATATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCACCCAATTCCAAGGTTAGCATGGAGTTACCCTCCACGCAAACCAGTGGCTCCAAGAGACCAGGGTCATCCATAACCAAGCCCAACCCTCACACCGAACCTCCATCTGCACCTGAACCACCCAAAGCTGTAAAGCGAGAGGGAAATCGCAAGGGAGCAACCTCAAGTTCTGAGCAAGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGAAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAGCAGCTAGAGTCAAGTAGAATTAAGCTTAATCAGCTAGAACAAGAGTTGCAGCGTGCAAGAGCTCAAGGCATATTAATGGGTGGAAATGCCCTTCTGGGAGGTGAGCAAGGTTTTCCTATGGCTATGACTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCAAGATGGTTAGAGGAGCACCAGCGTATAGTGTGCGAACTAAGAGGTGCAGTGCAAGAACACCTCCATGAAAACGAGCTTCGGTTATATGTAGACAATTGTTTGGCTCACTACGACCAAGTAATGAACCTGAAGAGCATAGTGGCCAAAACAGACGTATTCCACCTTGTTTTTGGCATGTGGAAGACCCCAGCTGAACGATGCTTCATGTGGATTGGTGGTTTCAGACCTTCTGAACTCATCAAGATTATTCTGGGTCAAATCGAGCCTCTCACAGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCCACACAAGAGGCAGAAGAGGCTCTTTCACAAGGGCTTGATGCCCTAAACCAATCTCTTTCGGACACTTTAACATCAGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATGAACAAACTCTCCACTCTTGAAAGTTTTGCGAGACAGGCTGATAATCTGAGGCACCAAACCATTCACCGTCTGCAGCAACTTCTAACCACGCGCCAAGCAGCGAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGTCTTCGAGCCCTCAGTTCTCTCTGGTTCACGCGCCCTCGCCAAGACTAG 1137 0.4837 MRPPPTLNIFPSQPMHAVPPPNSKVSMELPSTQTSGSKRPGSSITKPNPHTEPPSAPEPPKAVKREGNRKGATSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGILMGGNALLGGEQGFPMAMTGISSEAAMFDVEYARWLEEHQRIVCELRGAVQEHLHENELRLYVDNCLAHYDQVMNLKSIVAKTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSDTLTSDSLWCPPNMTNYMGQMAVAMNKLSTLESFARQADNLRHQTIHRLQQLLTTRQAARCLVAISEYFHRLRALSSLWFTRPRQD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00343 378 CDD bZIP_HBP1b-like 87 139 - -
Vimu3g00343 378 SUPERFAMILY Leucine zipper domain 87 129 IPR046347 GO:0003700|GO:0006355
Vimu3g00343 378 PANTHER TRANSCRIPTION FACTOR TGA9 14 377 - -
Vimu3g00343 378 FunFam BZIP family transcription factor 86 135 - -
Vimu3g00343 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 90 105 IPR004827 GO:0003700|GO:0006355
Vimu3g00343 378 SMART brlzneu 83 149 IPR004827 GO:0003700|GO:0006355
Vimu3g00343 378 Pfam bZIP transcription factor 87 125 IPR004827 GO:0003700|GO:0006355
Vimu3g00343 378 MobiDBLite consensus disorder prediction 1 90 - -
Vimu3g00343 378 Pfam Seed dormancy control 178 251 IPR025422 GO:0006351|GO:0043565
Vimu3g00343 378 Coils Coil 106 133 - -
Vimu3g00343 378 MobiDBLite consensus disorder prediction 1 18 - -
Vimu3g00343 378 Gene3D - 86 136 - -
Vimu3g00343 378 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 85 129 IPR004827 GO:0003700|GO:0006355
Vimu3g00343 378 MobiDBLite consensus disorder prediction 25 49 - -
Vimu3g00343 378 ProSiteProfiles DOG1 domain profile. 160 374 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00343 Vimu-Chr3 3284948 3290153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00343 1 378 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 67.430 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu3g00343 DOG1 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00343 K14431 - gmx:100800059 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02969 6 26222629 26228674 Vimu3g00343 3 3284948 3290153 PCT