Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00338 ATGACTACAGCTCTGTTGTTTTCTAATTTATCTGTTTTGTCAGGAACATTCAAGACAATCTGTTTAGCGGCCTTCTTCCGCAGCATTTTCAGTCCATACCAAACTTATGGGAATAAGTTCCAAACCGTGGACAACTCTCCTCCCTGGGCATTTCCCTTGGACAACGTACCCCTTGAGAAAAATACTAGTCGCCCACCCATAACTCAGGCAAATGCCATCGAGAACTACGCTCCTATTAGGGTAAGGAAACAAAAGAAGAAACATATCAGTCCCGGAGGATTAGCTTTTATGGTCGGTACAGGAACTTTATTGGCAACCGGTTTCGCTCTCTTCATTGCGATCCGTTTGAATAAGCTTTATACAAAGAGACTGGAGGACTATGAAAGCGACCGCAGTGCATTGCCTTCTTGTCCAATCAGTGCGACCAAAGAAGATTCTACTACGGCAATAGACGAGAGCCTACAAATCCCACCTTATAATGCTGCATCCATTTTGGGTCCAAGGCGATTAACTTCCCAACCCCATAAAAGAACTGGGGAAACATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCAATGGAAGGATAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCATGAAGACAACCTTCTGGGAGAAGGATCGCTTGGTCCTGTTTATAGAGCTGAATTTCCAAATAACAAGGTTTTGGCTGTGAAGAATATCAACATGGCGGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTGAGCACGGCTTCCCGTTTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCATGGACAACATCTTCTTGTCTTTGAGTATGTCAGAAATTTAACTCTAGATGATGCTCTTCATAGTACAGCATACAAACCTTTATCGTGGGGCACACGTCTCCGGATCGCTCTAGGTGTTGGTCGGGCCCTGGACTATTTGCACTCGACGTTCTCCCCTCCTGTCGCCCATGGCAAATTAAAGGCTACCAATGTTCTACTGGACGAAAACCTCATGCCTTGTGTTACTGACTGTGGCTTGGCTATTCTGAGACCACTGATAAGCAGTAAAGCCAAAAACCGGGCTTCCGAGATTGATATTAGAGATACAGGATACAGTTCACCTGACCATGGCCAACCAGGAGTTGGCAGCACGAAGAGCGACATCTTTGCCTTTGGCGTGTTGCTTCTTGAACTATTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCGAGGGAAGAGCACTATCTGGCAAAGTGGGCTTCATCAAGACTGCATGATAGTGACAGTTTGGAACAGATGGTGGATCCAGCAATAAAACGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGCATTCAGGTGGTTGTAGGGGATAATGGATTGTCAATAAATCATGACTGTATAGATATAGTAGATAGACCAGTGAAGCAATTTCGACCTCCAATGTCTGAAATCGTAGACAATCTTGTATCATTTTCTCAAAAGCTTGTTTCAGAGAGTGGTGAAGCAGATGAAACTGAACCTGATCCACTTGACATGTCTTTTCACACAACTATCTCCCGCTTTAATGGTTCACCTGCTCTGAGCTATGTATCCGCCTGA 1656 0.4426 MTTALLFSNLSVLSGTFKTICLAAFFRSIFSPYQTYGNKFQTVDNSPPWAFPLDNVPLEKNTSRPPITQANAIENYAPIRVRKQKKKHISPGGLAFMVGTGTLLATGFALFIAIRLNKLYTKRLEDYESDRSALPSCPISATKEDSTTAIDESLQIPPYNAASILGPRRLTSQPHKRTGETSRKSFSGRDRFNGRIKVYTVAEVQLVTNSFHEDNLLGEGSLGPVYRAEFPNNKVLAVKNINMAGMSFSEEEKFLDVVSTASRLKHPNIVSLKGYCLEHGQHLLVFEYVRNLTLDDALHSTAYKPLSWGTRLRIALGVGRALDYLHSTFSPPVAHGKLKATNVLLDENLMPCVTDCGLAILRPLISSKAKNRASEIDIRDTGYSSPDHGQPGVGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEHYLAKWASSRLHDSDSLEQMVDPAIKRTFSSKALSRYADIISLCIQVVVGDNGLSINHDCIDIVDRPVKQFRPPMSEIVDNLVSFSQKLVSESGEADETEPDPLDMSFHTTISRFNGSPALSYVSA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00338 551 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 176 288 - -
Vimu3g00338 551 PANTHER OS01G0253100 PROTEIN 177 512 - -
Vimu3g00338 551 Gene3D Transferase(Phosphotransferase) domain 1 290 527 - -
Vimu3g00338 551 Pfam Protein tyrosine and serine/threonine kinase 214 461 IPR001245 GO:0004672|GO:0006468
Vimu3g00338 551 FunFam Leucine-rich repeat receptor-like protein kinase 289 475 - -
Vimu3g00338 551 ProSiteProfiles Protein kinase domain profile. 211 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00338 551 SUPERFAMILY Protein kinase-like (PK-like) 188 471 IPR011009 -
Vimu3g00338 551 Gene3D Phosphorylase Kinase; domain 1 172 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00338 Vimu-Chr3 3235873 3238970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00338 5 551 Strubbelig Receptor Gene Family AT5G06820 46.774 4.71e-147 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu3g00338 PK_Tyr_Ser-Thr 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00338 - - vun:114191517 929.472