Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00337 TTGTTGGCGATGGATTCATCACCGGCGACGAGGGAGAGAGAAAACGGTGCACAAGGTAACGAGGTGCAAGAAGATGACTACATGGGTGACCTTTCTCAGTTTCTTCCTTCCGATGCTTTGGACCCTCCCAAGATTTCTTCATCCAAAAAGATTTCCAGCACGAAAGATCCTTTGGTCAACCCTTCAAGGAACCGGTTGAAAACTCTAAGCTGGCAAGAGCGGCGAAAACTTGAAAGAGAAAGGAAGCAACAAGAAGAGGATGAGCAAACATTAGCAAAAGTGGAAGCTCCAATACCACAATCCAACATTGGGTTTAAGCTTCTCAAACAGATGGGTTACACTCCAGGTTCTGCCCTAGGCAAGCAGGGCTCAGGCAGGGCCGAACCAGTGGGGATTGAAATTCGGCGGTCACGAGCTGGTGTAGGATTAGAAGATCCCCACAAGGAGAAGAGGAAAAAGGAGGAAATCATGATGAACAGGAAAAGGAGGAAAGAAGAGGACCTAATGAAAGAATTTGGGTCCAGGCAGAAGTCACAGTGGCAGAGTAAGAGAGTTATAATTAATTATAATAAGGCAAAGGCAGCCCTTGACCAATTGGAAAATAGGGAAATTGTAGAGCCACAAAAAAATGATGATGATTCAGAGGTTGAAGAAGAAGAGGAAGAAATAACAGAAGAGGCACGTAACTTAACCATAACTTTTTCACTTATATTTCTTTTGACCCGGTTTTTGGAATTAAACGATGTTTTGATGAAACTGAGGGATGAATTTAATTATTGCCTCTTCTGTGGATGCAAATACGAATCAAGTGAAGCCCTTTTGGACAACTGCCCTGGAACCAATGAAGATGACCACTAA 858 0.4347 MLAMDSSPATRERENGAQGNEVQEDDYMGDLSQFLPSDALDPPKISSSKKISSTKDPLVNPSRNRLKTLSWQERRKLERERKQQEEDEQTLAKVEAPIPQSNIGFKLLKQMGYTPGSALGKQGSGRAEPVGIEIRRSRAGVGLEDPHKEKRKKEEIMMNRKRRKEEDLMKEFGSRQKSQWQSKRVIINYNKAKAALDQLENREIVEPQKNDDDSEVEEEEEEITEEARNLTITFSLIFLLTRFLELNDVLMKLRDEFNYCLFCGCKYESSEALLDNCPGTNEDDH 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00337 285 MobiDBLite consensus disorder prediction 141 174 - -
Vimu3g00337 285 Coils Coil 182 202 - -
Vimu3g00337 285 MobiDBLite consensus disorder prediction 210 224 - -
Vimu3g00337 285 MobiDBLite consensus disorder prediction 202 224 - -
Vimu3g00337 285 MobiDBLite consensus disorder prediction 46 67 - -
Vimu3g00337 285 ProSiteProfiles G-patch domain profile. 100 146 IPR000467 GO:0003676
Vimu3g00337 285 PANTHER UNCHARACTERIZED 23 285 IPR039249 -
Vimu3g00337 285 MobiDBLite consensus disorder prediction 68 92 - -
Vimu3g00337 285 MobiDBLite consensus disorder prediction 1 95 - -
Vimu3g00337 285 Coils Coil 74 94 - -
Vimu3g00337 285 SMART DUF4187_2 213 285 IPR025239 -
Vimu3g00337 285 Pfam Domain of unknown function (DUF4187) 245 285 IPR025239 -
Vimu3g00337 285 Pfam G-patch domain 100 143 IPR000467 GO:0003676
Vimu3g00337 285 Coils Coil 209 229 - -
Vimu3g00337 285 MobiDBLite consensus disorder prediction 141 173 - -
Vimu3g00337 285 SMART G-patch_5 98 144 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00337 92 142 C2H2 Transcription Factor Family AT5G26610 45.098 9.06e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00337 - - gmx:100777380 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00337 3 3221443 3223512 Vimu3g00337 3 3221443 3223512 ECH