Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00332 ATGAGTTTTTCTGGTTCAATGAGCAAAGCAGCAGTACCCTCTTCTTCCTCATCACCCAACTCTTCCACTGAGTCGCTTGATGGGTTGAAATTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCTGCTGCTGCTGCAACCACTCAAGGGGCGAAAACGAGTGGTGGGGTTTCTTCTTCTTCTTTAAAGAAGGGAAGGGGTGGTTCAGTGCAACCTGCTCAGCCTCCTAGATGTCAGGTTCAGGGCTGCAATGCAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCACAAGGTCTGTGCCATGCACTCAAAGTCTCCAACGGTCATTGTGGCTGGTCTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTACCCTCTTTCTCTCTCTTTGTTTTTCTTTATTATTCACTTAATAAAGGAAAATTTTCTTTTCTTTCTTATTCTTTAGCTTCTTGCTATTTTTGGTGTTTTTCTATATTGGGCAGTCTTCTTCTTTTACTTTCATCATCTTACATCCTGCTTTGCTTTTTGCTATTTTTATCAGTTTTCCTTACTTTCGTCATTTTACATCTTGGTTTTTGCTATTTTTAG 597 0.4154 MSFSGSMSKAAVPSSSSSPNSSTESLDGLKFGQKIYFEDVSVAAAAATTQGAKTSGGVSSSSLKKGRGGSVQPAQPPRCQVQGCNADLSGAKAYYSRHKVCAMHSKSPTVIVAGLEQRFCQQCSRLPSFSLFVFLYYSLNKGKFSFLSYSLASCYFWCFSILGSLLLLLSSSYILLCFLLFLSVFLTFVILHLGFCYF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00332 198 Gene3D - 75 132 IPR036893 GO:0003677|GO:0005634
Vimu3g00332 198 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g00332 198 Pfam SBP domain 79 132 IPR004333 GO:0003677
Vimu3g00332 198 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 130 IPR044817 GO:0003677
Vimu3g00332 198 SUPERFAMILY SBT domain 76 129 IPR036893 GO:0003677|GO:0005634
Vimu3g00332 198 MobiDBLite consensus disorder prediction 52 68 - -
Vimu3g00332 198 ProSiteProfiles Zinc finger SBP-type profile. 76 153 IPR004333 GO:0003677
Vimu3g00332 198 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00332 Vimu-Chr3 3185230 3185826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00332 29 132 SBP-box Gene Family AT3G57920 51.923 2.46e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu3g00332 SBP 6.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00332 - - vum:124845567 201.445