Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00330 ATGAACGAGTACAAGATTGATTGTGTTGGACGGATTCAACAAAGCTATGGTCTAAATGGGGATTTGAGTTCAGAGTTTGGCAATTGTTCTAGTCAATGTTTTGATATAATACAGGCTTCACATATGGGAACTTGCAATCAGCCACTTGCTATGGCCAGTGGTGGATTTGAAGAGGAATCACACATAGGCCAAACCAAATCATCTAGCAGCATTATAAGCCGTTTTGAATCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGATTCCCACAATATGATAGACTACTTGGTAACCCCTCTTTGATATCTCAGTTCTCCAAGATCAGTGATGCGGAATTCCCTTTGTATCAATCTCCAAGGCAAAACCTTTTCTTGGCTTCATTGGCAAACCAACCTGCCCCTAACTTTGAGTTGTCAAATCCCTTGCAAGCAATGCTCTTATCCCATGTGAATAGTGATCAATGTGTTAGATCTCCTGAAAAGTCTAATAAAATCCCATCTGGGAATTTCCCTGGCAGCAGTTTTCTTCCAATTGAACAGCCCAAGTTGTTCATTGATGATGCTGCAAGCCCTTCGGTTCCTTGTATAGGAAATCAGGATCAAAGAGATTGTTGTGGCTCATACAATTTACCTGCTGCACAGATTAGCTTCTCTTCTCAGCAAGAGATGCTGTCACCAACACTCTCAGCAGGTAGTTTGCTAACTTCTTCTGGAAACTCTTCTTCAAATGGACCAGTAGTCTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAAGCAACGCCAAAAGCTATATTAAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTCAAAAGTCATCTGCAGAAATATAGAATTGCCAAATACATGCCACAATCAACTCAAGGGAAATCTGAGAAAAGAACCAATGTAGAGAATGTGCATCTTGATGCAAAAACATGCTGTGACTCTAATCAACTGAGTTTCTTGTTCTTCATCGCCAGTGGCTTGCAAATTAGAGAGGCACTTCAGTTGCAGCTAGATGTTCAGAGGCGCCTTCATGAACAACTAGAGATTCAGAGAAAACTACAGTTGAGGATTGAGGAACAAGGTAAGCAGCTGAAAATGATGTTTGACCAACAGCAGAAGACAAGTGACAGCAACTTGAGTACTCTGAATTTGGGCAATACAACTAATAATGATAGACCAATTAGTTCTAAAGATGTTCAGGTTTCAGTTTCCGAAGGGTCTAAAAGATTACTTATTCCTTCCAACATAACTTAG 1323 0.4067 MNEYKIDCVGRIQQSYGLNGDLSSEFGNCSSQCFDIIQASHMGTCNQPLAMASGGFEEESHIGQTKSSSSIISRFESPASAFYATEICMGFPQYDRLLGNPSLISQFSKISDAEFPLYQSPRQNLFLASLANQPAPNFELSNPLQAMLLSHVNSDQCVRSPEKSNKIPSGNFPGSSFLPIEQPKLFIDDAASPSVPCIGNQDQRDCCGSYNLPAAQISFSSQQEMLSPTLSAGSLLTSSGNSSSNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPQSTQGKSEKRTNVENVHLDAKTCCDSNQLSFLFFIASGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSNLSTLNLGNTTNNDRPISSKDVQVSVSEGSKRLLIPSNIT 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00330 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 309 IPR017930 -
Vimu3g00330 440 Gene3D - 251 310 - -
Vimu3g00330 440 SUPERFAMILY Homeodomain-like 250 306 IPR009057 -
Vimu3g00330 440 Coils Coil 353 373 - -
Vimu3g00330 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Vimu3g00330 440 MobiDBLite consensus disorder prediction 395 422 - -
Vimu3g00330 440 FunFam Myb family transcription factor 251 309 - -
Vimu3g00330 440 Pfam Myb-like DNA-binding domain 256 305 IPR001005 -
Vimu3g00330 440 Pfam MYB-CC type transfactor, LHEQLE motif 350 397 IPR025756 -
Vimu3g00330 440 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 232 414 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00330 Vimu-Chr3 3156290 3159546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00330 242 394 G2-like Transcription Factor Family AT4G28610 53.548 5.90e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu3g00330 Myb_DNA-binding 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00330 - - gmx:102668541 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00330 3 3156290 3159546 Vimu3g00330 3 3156290 3159546 ECH