Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00328 ATGGAAAATGCAGTAGCAACCACACAAGACGACGACTCCGACGACATTAAGCGGAGGCGCAAGGATTCAGGATGGACGAAGTATTTTGAACATGGAGGAGGAAAGGTAAATGTTGTGGAAACAACTGAGGAATGGGATGTTGATCTCTCTATGCTCTTTGTTGGTGTTAGGTTTGCTCATGGGGCTCACAATGATGACGAAAATGGAATGTTAGCTGATCGATTAGAGAAACAATTCATTAGAGAAGTAACACCTTTATCTCGTCTCCACCATCGAAATGTTATCAAGTTCGTAGCAGCGTGCAGAAAGCCACATGTCTACTGTGTTATCACAGAATATCTATCAGAAGGTGTCATTCACCGAGACCTTAAACCAGAGAATGTCCTTATTAATGAATACTTTCACCTCAAAACTGCTGATTTTGGCATTGCTTGTGAGGAAGCTTACTGTGACTTATTTAGGGATGACCCACTGTCTACATCCTATGATCTAAACGATATCGGAATCAAATGCGACATCCACGGCTTTGTAACGAAGCTGAAAAATCTATGGTCGAACCTCGAACGCAGCATCGAACAATCTGAATTCGAAACTGCCACCGTAATCTTCCTCGGCGACTACTGCGACCGCGGTCCCGACACCTGCCACGTCATCGATATCCTCGTGGCGTTGCCCTCCCGTTACCCGCGACAAAAGCACGTATTCCTTTCCAACAACCATGAACTGGCCATTGCCGCCTTCCTCCACCTCCTGCCGCCACCTTTGGACGGGTCGTCGTTCTCATACAGGTCTTCGTTCCTCAACCTTCACAATACCCTTACCTGTCCCATCAAGGGTTTTCACATCCTTTTGTTCCAAACTGAAAATAATTAA 873 0.457 MENAVATTQDDDSDDIKRRRKDSGWTKYFEHGGGKVNVVETTEEWDVDLSMLFVGVRFAHGAHNDDENGMLADRLEKQFIREVTPLSRLHHRNVIKFVAACRKPHVYCVITEYLSEGVIHRDLKPENVLINEYFHLKTADFGIACEEAYCDLFRDDPLSTSYDLNDIGIKCDIHGFVTKLKNLWSNLERSIEQSEFETATVIFLGDYCDRGPDTCHVIDILVALPSRYPRQKHVFLSNNHELAIAAFLHLLPPPLDGSSFSYRSSFLNLHNTLTCPIKGFHILLFQTENN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00328 290 Gene3D - 167 274 IPR029052 -
Vimu3g00328 290 ProSiteProfiles Protein kinase domain profile. 1 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00328 290 SUPERFAMILY Protein kinase-like (PK-like) 74 146 IPR011009 -
Vimu3g00328 290 Gene3D Phosphorylase Kinase; domain 1 48 111 - -
Vimu3g00328 290 SUPERFAMILY Metallo-dependent phosphatases 169 248 IPR029052 -
Vimu3g00328 290 SMART serkin_6 29 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00328 290 Pfam Protein kinase domain 115 147 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00328 290 PANTHER TYROSINE-PROTEIN PHOSPHATASE RLPH2 171 261 - -
Vimu3g00328 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Vimu3g00328 290 Gene3D Transferase(Phosphotransferase) domain 1 112 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00328 Vimu-Chr3 3112041 3113440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00328 18 176 MAP Kinase Kinase Kinase AT5G58950 42.152 1.26e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu3g00328 Pkinase 6.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00328 - - gmx:100784454 231.491