Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00318 ATGGCCTCCAAAGGTCCAAGGTCTAAGATTGATCATGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGCCGACCGAAAACTCATTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGGGGTGAAAAGAAGATGAAGGAAGAAGAACAGCGATTAAGAAAGGTTGCACTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTTGATGAAAAGAAGAAAAAGACACTTGACAAACAGCTTGAGTTTTTATTAGGGCAAACAGAGAGGTACTCAACAATGCTGGCGGAAAATCTTGTGGATACTCATAAATCAGGAGAGAATAATTCTGCAGAGCATCACATGAGTATTCAACACAAAGATGCGCATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCTGCCGACAATGATGATGAATATGATGTACAATCTGATGATGAATCGGAGGACGACGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCACAATGAAATGGATCTTCCGATTGAGGAGTTACTCAAGCGTTATGCAAGGGAGAAAGGAGAATCTGTGATGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGTTGAGAAAATAGTAATAACAACTGGTGATGGTAAGAAAATATTAGCATCAGAAAATGGTGATGATCATTTATCTGTTAGCAAAAATGGTACAAACAACTCCAGTATGGTCTCTGGTCGACGTTGTGAGGAAAGTAATGGTGATATTGCTACACCAACAAAAAATCTATCTCAATATGAGGAAGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTTCGTATGATTTTACTGATGAAGAGGAAGATGGAGACTTTTTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGAGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCGAGTGACAACGAAGATGGGGGATATGAAACTGATTATGCTTCTGCTTTATCCGAAGACCATTCAGACTCTCCTGTCCATGAAGATGCTGGGCAAAAGGATTCTGCCATTCCTATGGATGAAGATATAAAGTCTGGTGAACACCTGGCTACCACACAGTCCCAGACAGAAGAACATTGGGAATCACAAAATTTGGATCAAAGAGAAAGTGAGCATATAATTGCTGATGCAGCAGCTGCTGCAAGATCAGCACAACCTACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACTATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACCATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCGCATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACCGAATTTTTGAAATGGTGTCCTGCCTTTAAAATATTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACTACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATATTTGATCTTAGACGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAAAGGCGGATTCTCTTGACTGGTACACCACTACAGAACGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAGGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAATTAATAAGGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAACAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAACTTGTATGAGGATTTTATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAGCTTCGTAAAGTTTGCAATCATCCTGATCTATTTGAGGGTCGTCCTATTGTAAGTTCGTTTGATATATGTGGCATTGATATTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGTCCCTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTTACTGATCTTGACTATAGTATGACTGCATGGGAAAGTGATGAAGTACAAGCTATTGAGACCCCTGGAACCTCAATCATGGAGCGTACTGATATAGTTGAGCTAGAAGTAATTAGACCACTAAATTGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAATAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAGAGACCTATGTACTCAACAACTCTGAGGAATCTTGTTACCTTAAGGCATCCTGTATATGACATTCATCTGGTGAAAGCAAACCCTACTTCATATATGTACTCAACAAAGCTGGCTGACATTGTTCTCTCCCCCATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGTGAGACAAATGTGTTTCTGCAGCCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTGCCACTACTGTCACCAATCCGACCAGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGCCACCGAGCTTTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTATATGGCTATACATACATGCGTTTAGATGGATCAACCCAACCAGAGGAGAGACAAACCTTAATGCAACGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGATGCCATAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATTAGTGAAAGCACAATTGAGGAGAATATTTTGAAGAAAGCCAATCAGAAGCGAGCACTTGATAATCTCGTTATACAAAGTGGGAGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGCCATAGAACACTTTCAATAAAAAATATGCTGAAGGAGAAGAACCAGAACAATGGGGAAGATTCTGTAACGAATGCAGATGTAGAGGCTGCACTGAAATGTGTTGAAGATGAGGCAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACCGAGGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCAGAATTAGGTGAATCTGTTTCAAACTTAAATAAAGAGAATGCCTTGGTGTTAAATGGAAATGATCATAAGGAAGATAGACCACCAAACTCTATTGTTGCCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGAATTGAAAAGTACAAGGAGGAGATGGAGGCTGAAATTGATGAAGACGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTGATGGAGGAACTTGAATATGAAGCTAGACTGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACAACACCAGGGGATTTGAGGCCCAAACCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCCTTAACTTCTGGATTGAAACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGACGAGGATATCACTGGTCTGGAATTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAATCTAAAGCAACGACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGTGTCTGATTTAGAATCCAATGCTTTGGTTGTGCAATATGAACATGCAGAATCAAAGACTAGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGATGATAAAGCCAGAAAAAATGAGAAAGGGAAATCATTGGTCAAAAGATTGCATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCTATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCATTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTATTGTCAATGGACAATGCAAATAATGAGAAGGCCATCACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATACGGATGCTGTTAGATGTTGCTTCTGAGCAGGCAAATAGGGAGTTGCTGCTACAGAAGCACTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTTGACCGCAGACAAAATCCAACACCCACCTGTAATGGTCTCTATATTGATCAGAGTCTTTTTACTTCCATAGGCCAGCCTTCGCAAAATTCCGTGAAGAAATCCTCTGAAAGGGTGCCATTTGCAAATCTGGTCCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATTCCACAACTGGGCAAGTGAATGATAGAGTCATCCTCCCTAACCAAGGGGAAGGCTTGCCAATGAGTGCTGATAGGTTGGATATTACTCTGGAATTCCCAAAAGAGGAGAGTGATGTCTTAGCTTTGTTTCCATCCGTTATAAACTTATCAATAAATGGGACTGATCCAACACCATCTTTAAGTAAGCAAACAGGAGATGGCTTTAAAACTTGTCTGTTTATGGCAGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACGTCTCTGGATGGGCATCATCTGCATTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGATACCATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCTAGGTCAAAGTCTAAAAGAGCTTCAATTGATGCCGGTGAAATGCATCACCATCAGGCTGACTCAATAGTCCAGTCGGTGCCATCACTTAAGGATCTGAGATTTGATCTCACTTCATTCGCTACAGATGAAATTGGACTTACTGCTGTGGACACATGTTTCGCCTTTGACTTGAATGTGGAAAGTTCATGGGAAATGGAGGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATAA 6138 0.4066 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKTLDKQLEFLLGQTERYSTMLAENLVDTHKSGENNSAEHHMSIQHKDAHGDVINEPKEADVVEYQSDAADNDDEYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALHNEMDLPIEELLKRYAREKGESVMKESSPEHSEDVEKIVITTGDGKKILASENGDDHLSVSKNGTNNSSMVSGRRCEESNGDIATPTKNLSQYEEGQSENLKEVPSETANEDFSYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGYETDYASALSEDHSDSPVHEDAGQKDSAIPMDEDIKSGEHLATTQSQTEEHWESQNLDQRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDIQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMTAWESDEVQAIETPGTSIMERTDIVELEVIRPLNCQKKLQGTNIFEDIQRKIWEERLKQAKERAIAIAWWNSLRCKKRPMYSTTLRNLVTLRHPVYDIHLVKANPTSYMYSTKLADIVLSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETNVFLQPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGSYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEDSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALVLNGNDHKEDRPPNSIVAKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEEEACDSKKTTPGDLRPKPKKKPKKAKFKSLKKGSLTSGLKPVKEESQAEPMNIDDEDITGLEFVSPNSSMQKKRKSKATTDGEEKRLKKSKKSKRDPPDIYVSDLESNALVVQYEHAESKTSESLVDLEQKTAGRGKMGGKISITPMPVKRIWMIKPEKMRKGNHWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKAITPGSGKALLKVTEDNIRMLLDVASEQANRELLLQKHFFALLSSAWKVASHVDRRQNPTPTCNGLYIDQSLFTSIGQPSQNSVKKSSERVPFANLVQSKKLVAAALDDSTTGQVNDRVILPNQGEGLPMSADRLDITLEFPKEESDVLALFPSVINLSINGTDPTPSLSKQTGDGFKTCLFMAENRFREATRICEEDVSGWASSAFPTSDARSRPGSRIPSSGKQKSSISDSAKPSRSKSKRASIDAGEMHHHQADSIVQSVPSLKDLRFDLTSFATDEIGLTAVDTCFAFDLNVESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR 2045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00318 2045 Gene3D - 765 821 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1469 1569 - -
Vimu3g00318 2045 Coils Coil 1400 1420 - -
Vimu3g00318 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1063 1213 IPR001650 -
Vimu3g00318 2045 SMART ultradead3 515 708 IPR014001 -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 156 188 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 373 417 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1916 1947 - -
Vimu3g00318 2045 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 765 830 - -
Vimu3g00318 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 741 IPR027417 -
Vimu3g00318 2045 Gene3D - 1030 1278 IPR027417 -
Vimu3g00318 2045 SMART helicmild6 1089 1172 IPR001650 -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 289 308 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1948 1966 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1 33 - -
Vimu3g00318 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 531 696 IPR014001 -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1469 1484 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 153 214 - -
Vimu3g00318 2045 Gene3D - 488 764 IPR038718 -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 189 214 - -
Vimu3g00318 2045 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Vimu3g00318 2045 Coils Coil 1450 1470 - -
Vimu3g00318 2045 CDD DEXQc_SRCAP 519 741 - -
Vimu3g00318 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 1228 IPR027417 -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 346 372 - -
Vimu3g00318 2045 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1030 1279 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 281 454 - -
Vimu3g00318 2045 Pfam HSA domain 27 93 IPR014012 -
Vimu3g00318 2045 Coils Coil 1276 1296 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 432 454 - -
Vimu3g00318 2045 Pfam SNF2-related domain 536 808 IPR000330 GO:0005524|GO:0140658
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1542 1569 - -
Vimu3g00318 2045 SUPERFAMILY Homeodomain-like 1643 1703 IPR009057 -
Vimu3g00318 2045 SMART bromneu2 23 94 IPR014012 -
Vimu3g00318 2045 Gene3D - 1628 1702 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 1916 1971 - -
Vimu3g00318 2045 FunFam Photoperiod-independent early flowering 1 489 764 - -
Vimu3g00318 2045 PANTHER HELICASE SRCAP-RELATED 15 1943 - -
Vimu3g00318 2045 CDD SF2_C_SNF 1048 1183 - -
Vimu3g00318 2045 MobiDBLite consensus disorder prediction 315 337 - -
Vimu3g00318 2045 Pfam Helicase conserved C-terminal domain 1060 1172 IPR001650 -
Vimu3g00318 2045 Pfam Myb-like DNA-binding domain 1645 1710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00318 Vimu-Chr3 2978823 2995605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00318 539 811 RAD5 or RAD16-like Gene Family AT5G43530 29.814 4.03e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu3g00318 SNF2_N 8.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00318 K11661 - gmx:100794898 3464.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00318 3 2978823 2995605 Vimu3g00318 3 2978823 2995605 ECH