Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00316 ATGAATTTAAAACCTGCTGCTCCTCCTTCAAGAGCTGTTACTGCACCACTTCCAGTATCTAATGGCTCTACTCCATCTGCTGTTAAAACACGCATATGTAACAAGTTCAATACTGCCGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCTCATGGTGAATGGGAACTTGGTAAACCTATTGCTCCCTCAATTGATGATCATCGACCTTTGGGACCTCCATCAGCTGGTCGAATGGCTGGTCGAATTGAGCCTACTCCCTTGGCTGGGAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCAGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATATGTCGCCAAACAGGAGCGAAACTTTCAATCCGAGAGCATGAAACTGATCCAAACCTTAGAAACATTGAACTCGAGGGAACTTTCGAACAGATAAAGGAGGCAAGTAATATGGTAAAAGATTTACTTTTGACCGTTTCAATGTCTGCCCCTCCCAAATCCACCCCTGGTGTTCCTGGTGCCCCTGCTCCACCTGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACCTTTGGAGATCGATGCCACTTTGCTCATGGAGCTGCTGAGTTGCGCAAGCAGGGGGTATGA 669 0.4694 MNLKPAAPPSRAVTAPLPVSNGSTPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPPSAGRMAGRIEPTPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAAELRKQGV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00316 222 SMART kh_6 94 164 IPR004087 GO:0003676
Vimu3g00316 222 Gene3D - 20 59 - -
Vimu3g00316 222 Gene3D - 187 220 - -
Vimu3g00316 222 PANTHER CCCH ZINC FINGER/TIS11-RELATED 170 219 IPR045877 GO:0003729
Vimu3g00316 222 ProSiteProfiles Zinc finger C3H1-type profile. 27 55 IPR000571 GO:0046872
Vimu3g00316 222 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 213 IPR000571 GO:0046872
Vimu3g00316 222 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 29 54 IPR000571 GO:0046872
Vimu3g00316 222 ProSiteProfiles Zinc finger C3H1-type profile. 188 215 IPR000571 GO:0046872
Vimu3g00316 222 FunFam Zinc finger CCCH domain-containing protein 22 59 - -
Vimu3g00316 222 SUPERFAMILY CCCH zinc finger 188 218 IPR036855 GO:0046872
Vimu3g00316 222 FunFam Zinc finger CCCH domain-containing protein 183 219 - -
Vimu3g00316 222 CDD KH-I_AtC3H36_like 98 163 - -
Vimu3g00316 222 SMART c3hfinal6 188 214 IPR000571 GO:0046872
Vimu3g00316 222 SMART c3hfinal6 27 54 IPR000571 GO:0046872
Vimu3g00316 222 Gene3D K Homology domain, type 1 93 186 IPR036612 GO:0003723
Vimu3g00316 222 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 85 165 IPR036612 GO:0003723
Vimu3g00316 222 MobiDBLite consensus disorder prediction 1 25 - -
Vimu3g00316 222 Pfam KH domain 98 160 IPR004088 GO:0003723
Vimu3g00316 222 SUPERFAMILY CCCH zinc finger 25 58 IPR036855 GO:0046872
Vimu3g00316 222 ProSiteProfiles Type-1 KH domain profile. 95 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00316 Vimu-Chr3 2966398 2967066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g00316 KH_1 5.3e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00316 - - pvu:PHAVU_007G259300g 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02948 6 26009121 26011495 Vimu3g00316 3 2966398 2967066 PCT