Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00309 ATGAATTCAAACGACAACGTTGTTCGCTTTTGTAGATTTGCGACGACGGAATTGAGAAGATTTGAGAGATACCTCCTTTTTACATTACCCGCTGATTTGAGAAGATTTATCCTCTCCCATTTCAAGTTTTCTCTGTTCAACACCCTTTCTCCAAATCCAACACTACTAAAAAGATTCTCTTCACACCATAATTCGCACCCAATCTTCTCACTCTTCCTTATTTTCGCTGCTCTCCAATTCCTACTTCCCAAGTTCCTATCTTTTCCCCACCCCATAATCCAAAACCTCGAGAATCACCCTCTGCCCCATCTGGGTGCATCTCATTGTTCAATTTTCATACCCCTCTCTCTCTGGGTTTTTCGTGTTCTTATTCTGGGGATCCGTGAGAGAGGGAAATGTGGGATGTTTTCGTGGCTGGCAAGGATAGTGTCGGCTTGCTTGAGACCGGTGAGGCGATATGCGCGTATGAGCAAGGATGACTTCGACGACGCCGCCGCCGCCAGCGACGTGCTCGTGTGGCACCGCGATCTCGAGAAGCACTCCTGCGGCGAGTTCTCCTTTGCCGTCGTGCAGGCTAACGAAGTGATCGAGGATCAAAGCCAGGTGGAGACCGGCGCCGATGCCGTCTTCGTCGGCGTCTATGACGGACACGGCGGAGCCGAAGCCTCGCGCTTCATCAACGATCACCTCTTCCATAATCTCATGAGTCAGTCTCCTTTTCCACCTTTCTCAATTCATCAACAACGGTGGTAA 753 0.4967 MNSNDNVVRFCRFATTELRRFERYLLFTLPADLRRFILSHFKFSLFNTLSPNPTLLKRFSSHHNSHPIFSLFLIFAALQFLLPKFLSFPHPIIQNLENHPLPHLGASHCSIFIPLSLWVFRVLILGIRERGKCGMFSWLARIVSACLRPVRRYARMSKDDFDDAAAASDVLVWHRDLEKHSCGEFSFAVVQANEVIEDQSQVETGADAVFVGVYDGHGGAEASRFINDHLFHNLMSQSPFPPFSIHQQRW 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00309 250 Gene3D - 155 248 IPR036457 -
Vimu3g00309 250 SUPERFAMILY PP2C-like 189 237 IPR036457 -
Vimu3g00309 250 ProSitePatterns PPM-type phosphatase domain signature. 210 218 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00309 Vimu-Chr3 2909863 2913213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00309 135 238 PP2C-type Phosphatase Gene Family AT5G06750 65.455 7.57e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00309 K01102 - gmx:100813740 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00309 3 2909863 2913213 Vimu3g00309 3 2909863 2913213 ECH
Vimu3g00309 3 2909863 2913213 Vimu11g03679 11 58763778 58771516 ECH
Vimu6g02941 6 25959348 25961058 Vimu3g00309 3 2909863 2913213 PCT