Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00308 ATGAGGAATCTTATTGCAGGGGTTGCTCAAGAAAATGGTTCTATCACCGAAGATATTATCAGGAATGCTGTTTCTGCTACTGAGGATGGGTTTCTGACTCTTGTTCGAAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGTTCCTGTTGCCTGGTTGGTGTTATCTGGAAAGGAACACTGTATATTGCGAATCTCGGAGACTCTCGAGCTGTGATTGGTTCTGCAGGTAGATCAAACAAGATCATCGCTGAACAGTTGACCAAAGAGCACAATGCAAGCAAGGAGGAGGTTAGACGAGAACTCAGGTCTTTGCATCCAGAAGATTCACAAATTGTAGTTATGAAGCAAGGAACATGGCGCATTAAAGGCATCATCCAGTTTTCTCATCAAGGTGTATATGGTTCTATATTTGGTTTTACACCCTTTTCTTCGTTTACACAGAATTATGTTTTGCAAGAAATTGTTTACAGTTCTTGTATGACAAGTGTTTTGGTAGAACTTGTGAAAACATTTATGATCTGTGTCTATAAGCTGTTTTTAGCTTATTTCAACAAGCCTTCTTGGCCTTTTGCTGCTACATTAAATTCTGATTCATCTGCTAATCTTGCATTTGCTTATGTATCCAGATCTATAGGAGATGCATATTTGAAGCGGCCGGAGTTCTCGTTCGATCCGTCATTCCCACGGTTCCATCTGCCTGAACCTATCCGCCGGCCCGTGCTAACCGCAGAACCATCCATATGTTCAAGAGTTTTACGACCTAATGATAAGTTCGTTATCTTTGCATCTGATGGACTTTGGGAGCACTTGACAAACCAGGAAGCTGCTGAGATTGTTCATAACAATCCACGAACAGGGATTGCAAGAAGACTTCTTATGGCAGCTTTGAATGAAGCAGCTAGGAAAAGGGAAATGAGATATAAAGACCTTCAGAAGATTGGAAAGGGGATTAGACGTTTCTTCCATGATGATATCACAGTGGTGGTTGTCTTCATTGACCATGAAATGGGTGGCAAGAAGGTTACAGTTCCTGAGTTGTCCATCAAAGGGTTTATTGACACAGTTGGACCATCAAATTTTAGAAATTTGCGGGGTTTGGAATGA 1110 0.4135 MRNLIAGVAQENGSITEDIIRNAVSATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSAGRSNKIIAEQLTKEHNASKEEVRRELRSLHPEDSQIVVMKQGTWRIKGIIQFSHQGVYGSIFGFTPFSSFTQNYVLQEIVYSSCMTSVLVELVKTFMICVYKLFLAYFNKPSWPFAATLNSDSSANLAFAYVSRSIGDAYLKRPEFSFDPSFPRFHLPEPIRRPVLTAEPSICSRVLRPNDKFVIFASDGLWEHLTNQEAAEIVHNNPRTGIARRLLMAALNEAARKREMRYKDLQKIGKGIRRFFHDDITVVVVFIDHEMGGKKVTVPELSIKGFIDTVGPSNFRNLRGLE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00308 369 Coils Coil 85 105 - -
Vimu3g00308 369 SUPERFAMILY PP2C-like 12 335 IPR036457 -
Vimu3g00308 369 Gene3D - 3 342 IPR036457 -
Vimu3g00308 369 SMART PP2C_4 1 332 IPR001932 -
Vimu3g00308 369 Pfam Protein phosphatase 2C 18 301 IPR001932 -
Vimu3g00308 369 ProSiteProfiles PPM-type phosphatase domain profile. 1 334 IPR001932 -
Vimu3g00308 369 CDD PP2Cc 1 334 IPR001932 -
Vimu3g00308 369 PANTHER PROTEIN PHOSPHATASE 16 332 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00308 Vimu-Chr3 2907028 2908460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00308 209 362 PP2C-type Phosphatase Gene Family AT5G06750 70.323 2.21e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00308 K01102 - gmx:100778238 313.538