Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00306 ATGGCAGATGGTGAGGATATCCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCGCGTCACACTGGTGTGATGGTTGGAATGGGACAAAAGGATGCTTATGTTGGTGATGAGGCTCAATCCAAGAGAGGTATTTTGACTCTGAAATACCCAATTGAGCATGGCATCGTTAACAACTGGGACGATATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTACGTGTGGCCCCAGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTCAATCCCAAGGCCAACCGAGAGAAAATGACACAGATTATGTTTGAGACCTTCAACACTCCAGCTATGTATGTTGCCATCCAGGCAGTGCTTTCCCTTTATGCTAGTGGTCGTACAACTGGTAAAGATTCTTCTGTATCTGATCCTCCTTTTCTTGGTATTGTTCTGGACTCTGGTGATGGTGTCAGCCATACAGTTCCAATCTATGAAGGGTATTCCCTGCCACATGCAATCCTGCGTTTGGATCTTGCAGGGCGTGATCTGACTGATGCCCTCATGAAAATCTTAACCGAGCGTGGCTACTCTTTCACCACTACTGCTGAGAGAGAAATTGTGAGAGATGTTAAGGAGAAGTTAGCCTACATTGCTCTTGACTATGAGCAAGAGCTAGAAACATCAAAAACAAGCTCAGCTGTTGAGAAGAGCTATGAGCTACCTGATGGACAGGTGATCACGATCGGTGCTGAAAGGTTCCGTTGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGGATGGAATCTTCTGGAATTCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTCTATGGTAACATTGTGTTGAGTGGTGGTTCAACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATCACCGCATTGGCCCCAAGCAGCATGAAGATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCCTCACTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGCCCCTCAATCGTCCACAGGAAATGCTTCTAA 1170 0.4692 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGKDSSVSDPPFLGIVLDSGDGVSHTVPIYEGYSLPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00306 389 FunFam Actin, alpha skeletal muscle 3 154 - -
Vimu3g00306 389 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vimu3g00306 389 Gene3D Actin; Chain A, domain 4 194 285 - -
Vimu3g00306 389 FunFam Putative actin-related protein 5 353 381 - -
Vimu3g00306 389 Pfam Actin 5 389 IPR004000 -
Vimu3g00306 389 FunFam Major actin 272 352 - -
Vimu3g00306 389 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vimu3g00306 389 ProSitePatterns Actins signature 2. 370 378 IPR004001 -
Vimu3g00306 389 Gene3D - 10 383 - -
Vimu3g00306 389 PANTHER ACTIN 9 382 IPR004000 -
Vimu3g00306 389 PRINTS Actin signature 28 37 IPR004000 -
Vimu3g00306 389 PRINTS Actin signature 51 62 IPR004000 -
Vimu3g00306 389 PRINTS Actin signature 63 85 IPR004000 -
Vimu3g00306 389 PRINTS Actin signature 250 266 IPR004000 -
Vimu3g00306 389 PRINTS Actin signature 117 130 IPR004000 -
Vimu3g00306 389 SUPERFAMILY Actin-like ATPase domain 164 389 IPR043129 -
Vimu3g00306 389 FunFam Actin, muscle 194 285 - -
Vimu3g00306 389 FunFam Actin, alpha skeletal muscle 36 73 - -
Vimu3g00306 389 CDD NBD_sugar-kinase_HSP70_actin 10 195 - -
Vimu3g00306 389 SMART actin_3 7 389 IPR004000 -
Vimu3g00306 389 Gene3D - 140 352 - -
Vimu3g00306 389 SUPERFAMILY Actin-like ATPase domain 5 148 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00306 Vimu-Chr3 2902652 2904905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00306 1 389 Miscellaneous Gene Families AT3G53750 93.573 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00306 K10355 - gmx:100777705 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00306 3 2902652 2904905 Vimu3g00306 3 2902652 2904905 ECH
Vimu6g02940 6 25954989 25957203 Vimu3g00306 3 2902652 2904905 PCT