Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00300 ATGGCCCCAGAAACCTTTCTCGTTGGGAGGGCAACGGTGGAGACAGATGTGTATGCATTTGGGGTTCTTGTGTTGGAAGTAGTGTGTGGAAAGAGGCCATGGAATGTGTATTCACAAGATGACTACAAGAACAGCATTGTGTATCGGGTATGGGATTTGTATGGGAAGGGAAAAGTAGTTGGTGGTGTTGATGCAAGGTTGAAGAAGGAGGAGATTATGGAGGAAGAAGTGGACTGCGTTCTTGTTCTTGGCTTGGCTTGTTGCCATCCAAATCCACACAAAAGACCATCCATGAGAACAGTTCTTCAGGTTCTGAATGGGGAAGCATCTCCACCTGAAGTGCCTAAGGAAATACCAGTTTTTATGTGGCCTGCTATCCCTCCATCCTTCAAAGAAGCTGAAGATAGCTCCCTCATCCAGGGAACACTCACTCCTTTCACTGAAATCATTGGAAGATGA 459 0.4619 MAPETFLVGRATVETDVYAFGVLVLEVVCGKRPWNVYSQDDYKNSIVYRVWDLYGKGKVVGGVDARLKKEEIMEEEVDCVLVLGLACCHPNPHKRPSMRTVLQVLNGEASPPEVPKEIPVFMWPAIPPSFKEAEDSSLIQGTLTPFTEIIGR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00300 152 PANTHER - 1 115 - -
Vimu3g00300 152 Pfam Protein tyrosine and serine/threonine kinase 1 104 IPR001245 GO:0004672|GO:0006468
Vimu3g00300 152 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00300 152 Gene3D Transferase(Phosphotransferase) domain 1 1 125 - -
Vimu3g00300 152 SUPERFAMILY Protein kinase-like (PK-like) 1 127 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00300 Vimu-Chr3 2871403 2871861 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00300 1 121 Receptor kinase-like Gene Family AT5G55830 43.802 5.02e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu3g00300 PK_Tyr_Ser-Thr 5.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00300 - - vum:124838792 292.352