Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00292 ATGGGTGGAGCGGCGAGGGTGCTGGACGTAAACCTTTTTCCGGAGGACGGCGATGACGGGACGTCGCTGTCGTCACCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCAGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACCAGAGCCAGTGATGACGAAGAAAATGGCTCAACCAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTTCGAGCCTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACCAACCAAACTTCTTCCACTATCAACAACAATAATGCTTCTCAAATCCCTGTCGAGTTATCTCTCAGCAAGCCCAGAATATTGCCCTTCCATAATGGCCAGGCCCAAGCAACCCAGCCACAAGCCCAAGCTCAAGCCCATCAGATAGCCTCTTCATGA 609 0.486 MGGAARVLDVNLFPEDGDDGTSLSSPSSAVSPFQMDFSMRNGNAEFGGRNKREQQEGEGTRASDDEENGSTRKKLRLSKEQSATKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNNASQIPVELSLSKPRILPFHNGQAQATQPQAQAQAHQIASS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00292 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 83 - -
Vimu3g00292 202 Pfam Homeobox associated leucine zipper 87 121 IPR003106 GO:0006355|GO:0043565
Vimu3g00292 202 SMART halz 87 130 IPR003106 GO:0006355|GO:0043565
Vimu3g00292 202 Coils Coil 93 123 - -
Vimu3g00292 202 MobiDBLite consensus disorder prediction 18 38 - -
Vimu3g00292 202 MobiDBLite consensus disorder prediction 1 82 - -
Vimu3g00292 202 MobiDBLite consensus disorder prediction 183 202 - -
Vimu3g00292 202 MobiDBLite consensus disorder prediction 46 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00292 Vimu-Chr3 2741476 2742598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00292 64 185 Homeobox Transcription Factor Family AT4G37790 45.732 7.09e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00292 K09338 - gmx:100776113 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00292 3 2741476 2742598 Vimu3g00292 3 2741476 2742598 ECH
Vimu6g02923 6 25822295 25823315 Vimu3g00292 3 2741476 2742598 PCT