Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00289 ATGTCGTGTTGTGGAGGTGCTGAAGAGGAATTTGGCGTTCCACCTACAAACCAATACAATGCATCAGTCGAAAAGGGTAGTGTATATGGTGGTGGAGGAGGAGATAGAGGAGAGCCAAGGGGCAATATAATCAAAACCGGTGCTCCAAAAAAAGAATTACCAATTGAGATACCTGCCATCTCATTGGATAAGTTAAATCAATTAACAGACAATTTTGGTACAAACGCTTTGATAGGAGAAGGTTCTTATGGAAGGGTTTACTTTGCAAAGATGGATGGAGATGAGGAAGTTGCAATCAAAAAGCTAGATACTACTTCTTCTCCAGAACCTGACTCTGATTTTGCAACACAACTATCAGTTGTTTCAAGATTGAAAAGTGACCATTTTGTGGAATTATTGGGATATTGTTTAGAGGAGAATAACAGAATTTTGGTTTATCAATATGCGAGTTTGGGTTCTTTGCACGACATATTACATGGAAGAAAAGGAGTACAAGGTGCTGAACCCGGTCCAGTTTTAAATTGGAGCCAAAGGGTAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAATTTCTTCATGAAAAGTGTCAACCTTCTATAGTTCATCGAGATGTTAGATCTAGCAATGTCTTACTCTTTGATGACTATGAATCCAAGATTGCAGATTTCAATTTGACAAACCAATCTTCTGACACTGCAGCTCGATTACACTCAACAAGAGTCTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCAATGACAGGACAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGGGTTGTTCTTTTGGAACTTTTAACTGGAAGAAAACCTGTTGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAATTAAATAATGAATACCCTCCTAAGGCAATTGCAAAGTTAGCAGCGGTTGCAGCACTTTGTGTGCAATATGAAGCTGATTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCTAAACCGACTGGCCCTGATTCTAACTCTAACGCTTAA 1104 0.3904 MSCCGGAEEEFGVPPTNQYNASVEKGSVYGGGGGDRGEPRGNIIKTGAPKKELPIEIPAISLDKLNQLTDNFGTNALIGEGSYGRVYFAKMDGDEEVAIKKLDTTSSPEPDSDFATQLSVVSRLKSDHFVELLGYCLEENNRILVYQYASLGSLHDILHGRKGVQGAEPGPVLNWSQRVKIAFGAAKGLEFLHEKCQPSIVHRDVRSSNVLLFDDYESKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPTGPDSNSNA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00289 367 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g00289 367 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vimu3g00289 367 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Vimu3g00289 367 FunFam PTI1-like tyrosine-protein kinase 3 150 359 - -
Vimu3g00289 367 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00289 367 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 27 358 - -
Vimu3g00289 367 SUPERFAMILY Protein kinase-like (PK-like) 53 350 IPR011009 -
Vimu3g00289 367 Gene3D Transferase(Phosphotransferase) domain 1 150 364 - -
Vimu3g00289 367 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
Vimu3g00289 367 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Vimu3g00289 367 Gene3D Phosphorylase Kinase; domain 1 46 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00289 Vimu-Chr3 2697023 2700005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00289 60 360 Receptor kinase-like Gene Family AT3G58690 43.709 2.66e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vimu3g00289 PK_Tyr_Ser-Thr 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00289 - - pvu:PHAVU_007G261200g 676.781