Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00284 ATGGACAAGACAACATCAACAACAACAACCTCAGACAGAGAAGTCCACGACTTCATGAACGTCGACTCCTTCTCCCAACTACCCTTCATCCGCCCTGCTCCTCTCGTCAAGGAGAAGTCCGCCATTCGTCTCTTCGGCATAGAATTCGCCGGTGGAAACAACACTGCTGTTTCGCCGGAGGACTCTGACTCTGCAGAAACAATAACCAACACCAACACTAACAACCTTAACTCCTTCGAACTCGATGCTACCAAGGATGATACCACTACCACCACTGTCACCGTTACTGATAACAACGCCGAAACCAGTCGCAGGTTCGAGTGCCACTACTGCTGCCGGAACTTCCCCACCTCCCAAGCCCTCGGCGGTCACCAAAACGCTCACAAACGGGAACGCCAACACGCCAAACGCGCCCACCTTCAGTCAACGATGGTGCACGGAAGCACGTTCTCTGACGCCCACCATGTCTACAATCTCATGAACTACCGCTTCGGTTCCGCTCCAACACCGCCAATGCCGTATCCAACGTGGAACAACGCCGCCGCGTCCACCGCCACCAACACGAGGTTCTACGGAACGACACCGTTTTCTCACAGCCACCACCAGCACCAGCAGCCTATTAACGGAAACCCTTTGGCTCTGTGGCGAATTCCGAGCAATAACCCTAGTTTCAGCCACGAACGGTCGTCGTTGCCGCCTTTGTTCGCGTCGCAGGAGATAACGAACGTGAGAGCCTCGCAGGTTGTGGGATCCTCGGGGTCGCAAAATCGCTACGTGTATGACTCCAAACGCGGAAGTGTGCACGACCATGTGAGTTTGGATCTTCATCTGTAG 834 0.5444 MDKTTSTTTTSDREVHDFMNVDSFSQLPFIRPAPLVKEKSAIRLFGIEFAGGNNTAVSPEDSDSAETITNTNTNNLNSFELDATKDDTTTTTVTVTDNNAETSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSTMVHGSTFSDAHHVYNLMNYRFGSAPTPPMPYPTWNNAAASTATNTRFYGTTPFSHSHHQHQQPINGNPLALWRIPSNNPSFSHERSSLPPLFASQEITNVRASQVVGSSGSQNRYVYDSKRGSVHDHVSLDLHL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00284 277 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Vimu3g00284 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Vimu3g00284 277 PANTHER ZINC FINGER PROTEIN GIS 1 277 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Vimu3g00284 277 SUPERFAMILY beta-beta-alpha zinc fingers 103 134 IPR036236 -
Vimu3g00284 277 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00284 Vimu-Chr3 2611644 2612477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00284 9 277 C2H2 Transcription Factor Family AT2G41940 40.214 7.70e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00284 - - vun:114190818 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00284 3 2611644 2612477 Vimu3g00284 3 2611644 2612477 ECH
Vimu6g02905 6 25619520 25620191 Vimu3g00284 3 2611644 2612477 PCT