Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00275 ATGAGAACTTCGTGGGCAGATTCTGCTGACAACTCAGCCATTGGTTCTGGCAATGGCAATTTCTCGGCTCACCCTCCCCGAGGTGCATATGTGCCTCCGCATCTTCGCAACAGGTCATTGTCGTCGGAGGTTCCTGCAGTGTCACACTCGCCGGCTCCTTTACCGGCGAATGACAGAGGGAATCCTGGTGGTGCAGCTCCTCATCAGGGAGGTGGTTACTTTAAAGCTGATCAAGGGCGGCAACAAGGATATGGTTCTGGTTATCAGACTGGTGGTGGCTGGAATGGTAGAGGGGCGGGGAGGGACCGTGGAAGGCGTGAAGTGAACCCTTTTGAGAATGATGAATCTGATGATAAATCTCTGGAGCAAGAGAACAGTGGGATTAACTTTGAGGCTTATGATGATATCCCTGTGGAGACTAGTGGGGACAATGTGCCCCCGCCTGTGAATACATTTGCTGAAATAGATTTGGGCGAGGCATTGAATCATAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCCCTTTCTGGGCGAGACTTGATGGCCTGTGCTCAGACCGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATAATGAGGGAGCAATATGTTCAAAGGCCACGTGTGGCTAGAACTGCTTTTCCGCTGGCACTTATCCTCTCCCCCACACGGGAACTTTCATGTCAGATACACGATGAGGCCAAAAAGTTTTCTTACCAAACAGGTGTGAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATAACCCAACAGTTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTGGATTTGCTCGAGAGGGCTCGGGTGTCACTGCAGATGATAAGGTATTTGGCGCTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTAGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACACTGTTGTTTAGTGCCACATTTCCAAAAGAGATACAGTGGGCGGGGGAGGAAGGAAATGATGGGAAATTGTTAATAAAGGTGGGTCCCACGTTATTGGCACGTAACGTAATTGATTATGAAAGACTTGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTTCTTGAGTCAGACAAGAGAAGCCATCTCATGGATCTTCTTCACGCTCAGAGGGAAAATGGTATTTACGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTGGACATCCCTCGGGTAGCACATGTGGTAAATTTTGATCTTCCGAATGACATTGATGATTACGTGCACCGAATAGGAAGAACGGGGCGAGCTGGTAAAATGGGATTAGCAACGGCCTTTTTCAATGAAAGTAATGTATCCTTGGCCAAACCATTGGCTGATCTGATGCAAGAGGCTAATCAAGAAGTTCCTGCCTGGCTCACCCGTTATGCGGCAAGGGCTGCTTACAGTGGTGGCAACAGAAACAGGAGGTCTGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGGGAAGGCTCATTTAATAAATCAACAGAGTACTATGGCGGTGGAAACGGTGGTGGAGCTGCTGGGGGATATGGCAATTACGGTGGAGGAGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1917 0.4789 MRTSWADSADNSAIGSGNGNFSAHPPRGAYVPPHLRNRSLSSEVPAVSHSPAPLPANDRGNPGGAAPHQGGGYFKADQGRQQGYGSGYQTGGGWNGRGAGRDRGRREVNPFENDESDDKSLEQENSGINFEAYDDIPVETSGDNVPPPVNTFAEIDLGEALNHNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQWAGEEGNDGKLLIKVGPTLLARNVIDYERLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNVSLAKPLADLMQEANQEVPAWLTRYAARAAYSGGNRNRRSGGSRFGGRDFRREGSFNKSTEYYGGGNGGGAAGGYGNYGGGGGYGQGVTSAWD 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00275 638 CDD DEADc_DDX3_DDX4 151 399 IPR044763 GO:0003724|GO:0005524
Vimu3g00275 638 SMART helicmild6 451 532 IPR001650 -
Vimu3g00275 638 MobiDBLite consensus disorder prediction 1 123 - -
Vimu3g00275 638 SMART ultradead3 169 377 IPR014001 -
Vimu3g00275 638 MobiDBLite consensus disorder prediction 99 123 - -
Vimu3g00275 638 FunFam ATP-dependent RNA helicase RhlB 395 575 - -
Vimu3g00275 638 Pfam DEAD/DEAH box helicase 174 351 IPR011545 GO:0003676|GO:0005524
Vimu3g00275 638 Pfam Helicase conserved C-terminal domain 418 532 IPR001650 -
Vimu3g00275 638 Gene3D - 105 395 IPR027417 -
Vimu3g00275 638 MobiDBLite consensus disorder prediction 1 19 - -
Vimu3g00275 638 FunFam Probable ATP-dependent RNA helicase DDX4 113 362 - -
Vimu3g00275 638 Gene3D - 396 576 IPR027417 -
Vimu3g00275 638 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Vimu3g00275 638 MobiDBLite consensus disorder prediction 578 597 - -
Vimu3g00275 638 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 365 IPR014001 -
Vimu3g00275 638 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 571 - -
Vimu3g00275 638 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 571 IPR001650 -
Vimu3g00275 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 547 IPR027417 -
Vimu3g00275 638 CDD SF2_C_DEAD 405 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00275 Vimu-Chr3 2527174 2533163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00275 134 564 Eukaryotic Initiation Factors Gene Family AT3G19760 29.032 4.48e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00275 K11594 - gmx:100818326 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00275 3 2527174 2533163 Vimu3g00275 3 2527174 2533163 ECH