Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00274 ATGGGCGCCAATTCGTTGCCATCGGCGGAATCAAACTTCGATCTCGATGAGCAGATCTCGCAGCTCATGCAATGCAAGCCGCTATCCGAGCACCAGGTTTGTTTTCCCCTCGTCGGTCACGATCCGTTTCGTGTCGATGCGGAATTAACTGTTTTGGCAAGATTTGAAAATTTTCGGTGGTTATTTTTTTCGTTTTGCCTTTGTTTCGCTCTCTTTTCGGCTTTGGAATCTCCGCGAATGAGAGATTTGGGTGGTTGCACAGCCTCTTCACTTTGGTATTTGATTCTGGGTTCAGAATTCTCACGTAGTATTGCTAGTTCTGTAATCTTTGTTGGCATCATGGCTGACAGTACTTATGGACATCTGTGGGTTTTCTCACTAACCTGTACATTGAAGCGCAAGACTGCTACATCTGTAAGAGTTTTATGTGAGAAGGCTAAGGAAATTTTGATGGATGAAAGTAATGTCCAGTTTCATGATCTTGCAGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTCGAAACTGTAACACTTCTTGTGTCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAATCATGAAAGTCGTCAGATCACTCAAGTATATGGTTTTTATGACGAGTGCCTCAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTCTTTCCGTTGACTGCATTGGTTGAGTCCGAAATATTCTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGGCCGATGTGTGATCTGTTATGGTCTGACCCGGATGATAGGTGTGGCTGGGGAATTTCTCCTCGTGGTGCAGGATATACTTTTGGTCAGGATATATCCGAACAATTTAATCACTCCAACAAGCTTAAGTTAATCGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAATTGGGCTCATGAACAGAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCAATTTTGGAGGTTGACGATTCCAAGGGACACACATTTATCCAGTTTGACCCTGCTCCCAGAAGAGGAGAACCTGATGTTACCCGTAGAACGCCTGATTACTTCCTATGA 1218 0.4269 MGANSLPSAESNFDLDEQISQLMQCKPLSEHQVCFPLVGHDPFRVDAELTVLARFENFRWLFFSFCLCFALFSALESPRMRDLGGCTASSLWYLILGSEFSRSIASSVIFVGIMADSTYGHLWVFSLTCTLKRKTATSVRVLCEKAKEILMDESNVQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNKLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFDPAPRRGEPDVTRRTPDYFL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00274 405 CDD MPP_PP2A_PP4_PP6 139 389 - -
Vimu3g00274 405 ProSitePatterns Serine/threonine specific protein phosphatases signature. 210 215 IPR006186 GO:0016787
Vimu3g00274 405 Pfam Calcineurin-like phosphoesterase 156 338 IPR004843 GO:0016787
Vimu3g00274 405 Gene3D - 101 405 IPR029052 -
Vimu3g00274 405 SMART pp2a_7 134 389 IPR006186 GO:0016787
Vimu3g00274 405 MobiDBLite consensus disorder prediction 386 405 - -
Vimu3g00274 405 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 14 405 IPR047129 GO:0004722
Vimu3g00274 405 SUPERFAMILY Metallo-dependent phosphatases 130 390 IPR029052 -
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 209 233 IPR006186 GO:0016787
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 273 300 IPR006186 GO:0016787
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 329 349 IPR006186 GO:0016787
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 147 174 IPR006186 GO:0016787
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 244 270 IPR006186 GO:0016787
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 351 367 IPR006186 GO:0016787
Vimu3g00274 405 PRINTS Serine/threonine phosphatase family signature 176 203 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00274 Vimu-Chr3 2499824 2506362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00274 132 335 Calmodulin-binding Proteins AT5G63870 31.950 2.49e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00274 K04382 - gmx:100817449 544.273