Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00267 ATGAGGGGAAGAAGCTACAGTTATAGTCCGTCACCTCCAAGGCATTACAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCAGATACAGAGGACGTGATAGAGATTTGCCAACCAGTCTTTTGGTTCGAAACCTTCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTAGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTATACAGGGTATGTGGTTAGCATCCATGCGGTGTTTATTATTGATTTCTATGGAGTGTTGAGAGTGACTTGTGATAATTTGGAGGATCCAAGAGGTTTCGGGTTTGTCCAGTACGTGGACCCAGCTGATGCTGCGGATGCAAAACATCACATGGACGGTCAAATTCTTCTTGGTCGCGAGTTAACTGTAGTGTTTGCTGAAGAAAACAGGAAGAAGCCTTCTGAAATGAGAGCAAGGGAACGGAGGAGGAGATCGCCTCGAACCTATTCTCCTAGTCCGGACTATTCGTCTTCTCCAAGACGAAGACGAGATTACAGGGTCAGAAAATATAGCGATCGATCATACTCTAGATCACCTTATGGATCAAGAAGCCGCAGCAGAAGCAGAAGTTACAGCAGGAGCTTGAGCGCAAGTCCTGGCTACTCTAGGTGA 651 0.4762 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGRDRDLPTSLLVRNLHRDCRAEDLHGPFSQFGPVKDVYLPRDYYTGYVVSIHAVFIIDFYGVLRVTCDNLEDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRRSPRTYSPSPDYSSSPRRRRDYRVRKYSDRSYSRSPYGSRSRSRSRSYSRSLSASPGYSR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00267 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 134 IPR000504 GO:0003723
Vimu3g00267 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 76 IPR000504 GO:0003723
Vimu3g00267 216 SUPERFAMILY RNA-binding domain, RBD 38 168 IPR035979 GO:0003676
Vimu3g00267 216 MobiDBLite consensus disorder prediction 1 33 - -
Vimu3g00267 216 MobiDBLite consensus disorder prediction 143 161 - -
Vimu3g00267 216 Gene3D - 24 213 IPR012677 -
Vimu3g00267 216 SMART rrm1_1 39 137 IPR000504 GO:0003723
Vimu3g00267 216 MobiDBLite consensus disorder prediction 188 216 - -
Vimu3g00267 216 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 206 - -
Vimu3g00267 216 MobiDBLite consensus disorder prediction 143 216 - -
Vimu3g00267 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00267 Vimu-Chr3 2441638 2443476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00267 38 166 Eukaryotic Initiation Factors Gene Family AT1G71770 24.806 3.95e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00267 K12900 - gmx:100816913 181.03