Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00257 TTCCGCCACTCCACTCTCTACACCCTCTGTGCTCCCCAATACAAACGAGTTCGTTCTCTTACATTTCTCTCTGCTTCTCTTCCTCTCATTCTTCTCTTCGCTAAGTCCCTGTCTTCATTTTCTTCTGCAGCCATGGCGGACGTCGTCACCGAAGCTGGCGTCGTTGCAGATCCCACCCAACTAGATGTCAAACTGTTCAACCGCTGGAGCTTCGAAGACATTCAGGTTAACGATATTTCTCTGGCTGATTATATCGGAGTGGTGTCGTCGAAGCATGCCACGTATGTTCCTCACACATCCGGTAGGTACTCGGTTAAGCGGTTTAGGAAAGCGCAGTGCCCCATTGTGGAGAGGCTTACCAACTCTCTTATGATGCATGGAAGAAACAACGGAAAGAAGCTCTTGGCTGTTCGGATTATCAAGCATGCCATGGAAATCATTCACTTGCTCACTGACCAGAATCCAATTCAAGTCATCGTTGATGCCGTCATCAATAGGTATGTTCTCCTATTGAAAATTGATTTTGTGATGATGATGGCAAAAGTATTAGCTCTATCTGATCATTCTCCTATATTGGATGATGGCGCTATTGTATTAGCTCTATCTGATCATTCTCCCATTGGTCCCCGTGAAGATGCCACTAGAATTGGATCTGCTGGAGTGGTGAGGAGACAAGCCGTGGATATCTCACCCCTTCGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCACGGGAAGCTGCTTTTAGAAACATCAAGACAATTGCTGAATGTTTGGCTGATGAACTTATTAATGCCGCAAAAGGTTCATCTAACAGGTGCTTCTTAATTTCAGTTATGCCATCAAGAAAAAAGATGAAATTGAAAGAGTTGCCAAGGCTAATCGTTAAGCAGTTCGAAGCT 909 0.4488 FRHSTLYTLCAPQYKRVRSLTFLSASLPLILLFAKSLSSFSSAAMADVVTEAGVVADPTQLDVKLFNRWSFEDIQVNDISLADYIGVVSSKHATYVPHTSGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLAVRIIKHAMEIIHLLTDQNPIQVIVDAVINRYVLLLKIDFVMMMAKVLALSDHSPILDDGAIVLALSDHSPIGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNRCFLISVMPSRKKMKLKELPRLIVKQFEA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00257 303 ProSitePatterns Ribosomal protein S7 signature. 117 143 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vimu3g00257 303 SUPERFAMILY Ribosomal protein S7 207 274 IPR036823 -
Vimu3g00257 303 CDD uS7_Eukaryote 64 274 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vimu3g00257 303 SUPERFAMILY Ribosomal protein S7 64 165 IPR036823 -
Vimu3g00257 303 PANTHER RIBOSOMAL PROTEIN S7 47 275 IPR000235 GO:0006412
Vimu3g00257 303 Gene3D Ribosomal protein S7 domain 204 291 IPR036823 -
Vimu3g00257 303 Gene3D Ribosomal protein S7 domain 45 169 IPR036823 -
Vimu3g00257 303 Pfam Ribosomal protein S7p/S5e 207 274 IPR023798 -
Vimu3g00257 303 Pfam Ribosomal protein S7p/S5e 106 165 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00257 Vimu-Chr3 2341277 2343768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00257 62 274 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 71.831 6.97e-108 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00257 K02989 - gmx:100305898 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00257 3 2341277 2343768 Vimu3g00257 3 2341277 2343768 ECH