Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00249 ATGGCTTTTCCTCCACACATAGTGGAAGACTGCATGGGCCTCCTCAAACTCTTCAGTGATGGCACCGTTTTTCGTTCCAATATTCAGTTCCAAGAACAACCCTCATCCACCCAACAACACAACAACCTCGTACTCTTCAAAGATTACATCTTTCACAAGAAATTCAACCTCCACCTCCGTCTCTACAAACCTAAACACGATAACGACGATAATGGTGCTGAGAGCAAGGAGAAGCTACCGGTGCTAATGTTCCTCCATGGTGGGGGCTTCTGCTTCGGGTCGCACGCGTGGCCGCACATTCATGCATGTTGTGCACGTCTCGCCGTGGATCTCCGTGCGGTTGTGGTGGCGCCGGACTATCGTCTGGCACCGGAGCACCGCCTTCCCGCGGCGGTGGACGATTGCGTGGAGGCTGTGCGGTGGCTGAAGAGGCAGGGACATGGCGGGGACTCGTGGGTGACGCGCCGCGTTGACTTTGAGCGCGTGTTTGTGTTTGGCGACTCGTCTGGCGGGAACATTGCGCACCACTTGGCGGTTCAGCTCGGATCCGGTTCGAGAGAGATGGACCCGGTTCGAGTACGAGGTTACGTGCTGATGGGCCCATTTTTCGGTGGGGTGGTTCGGACCAAGTCCGAGGTGGGCCCACCGGAACAAATGCTGACACTTGATTTGCTGGACAGACTGTCGATACCTATTGGAGAGAATAGAGATCACCCATTGGCAAACCCCTTTGGCCCTAATAGTCAGAATCTTGCAGAAGTGAAGCTTGATCCTATTTTAGTGATAGTTGGTGGCAATGAATTGTTGAAGGACAGAGCAAAAGACTATGCAACAAGGTTAAAGGAACTAGGGAAGAACATTGAATACGTTGAGTTCAAGGACAAGGAACATGGTTTTCTCACTCATGATTCATCCTCACAGGTTGTCCAAGATCTTCTGCAAATCATCAAACAATTCATGCTTCAAAATTCTAGTTAG 978 0.5123 MAFPPHIVEDCMGLLKLFSDGTVFRSNIQFQEQPSSTQQHNNLVLFKDYIFHKKFNLHLRLYKPKHDNDDNGAESKEKLPVLMFLHGGGFCFGSHAWPHIHACCARLAVDLRAVVVAPDYRLAPEHRLPAAVDDCVEAVRWLKRQGHGGDSWVTRRVDFERVFVFGDSSGGNIAHHLAVQLGSGSREMDPVRVRGYVLMGPFFGGVVRTKSEVGPPEQMLTLDLLDRLSIPIGENRDHPLANPFGPNSQNLAEVKLDPILVIVGGNELLKDRAKDYATRLKELGKNIEYVEFKDKEHGFLTHDSSSQVVQDLLQIIKQFMLQNSS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00249 325 Coils Coil 266 286 - -
Vimu3g00249 325 Gene3D alpha/beta hydrolase 14 324 IPR029058 -
Vimu3g00249 325 Pfam alpha/beta hydrolase fold 82 300 IPR013094 GO:0016787
Vimu3g00249 325 PANTHER ARYLACETAMIDE DEACETYLASE 15 300 - -
Vimu3g00249 325 SUPERFAMILY alpha/beta-Hydrolases 5 319 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00249 Vimu-Chr3 2166764 2169226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00249 7 320 Carbohydrate Esterase AT5G16080 35.347 2.22e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00249 - - gmx:100801473 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00249 3 2166764 2169226 Vimu3g00249 3 2166764 2169226 ECH
Vimu6g02217 6 19444327 19445007 Vimu3g00249 3 2166764 2169226 PCT