Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00244 TGTGCCTTAGCAAGTGTTAAGCTAGATAGCCATCCTTTTGGTGGTCAAGAAGTATATCCATCTTCTCTTGGATGGGTAATGTCAGCAGTCTCATCTAGAGCCTTCAGGTTGTATGGTGAAAAGGATCATAATGGGGACCGGATTCACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTAAATCCAAATGCTAGAATTCTTCAGGAAAAAGATACCGATACCATGAAGATGCAAGTTGTGGCTGAGACAACCATCAAAGAAGATGACCCTCTGTTACTTTGCTACGGTTGTTTAAACAATGATTTTTTCCTTCTTGATTATGGGTTCGTGATTCACTCAAACCCTTTGGATTGTATTGAGCTCAAATATGATGGCGTTCTTTTGGATGTTGTAAGCACTGCAGCTAGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGGAACTGATTTTATCTCAGTTGAATTTATCTGGAGTTACAAGCACGTTGGTAAGGTTTTATGACTGA 525 0.4057 CALASVKLDSHPFGGQEVYPSSLGWVMSAVSSRAFRLYGEKDHNGDRIHIPMMLPLIDMCNHSLNPNARILQEKDTDTMKMQVVAETTIKEDDPLLLCYGCLNNDFFLLDYGFVIHSNPLDCIELKYDGVLLDVVSTAARVSSPNFSAPAPWQELILSQLNLSGVTSTLVRFYD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00244 174 CDD SET_LSMT 2 114 - -
Vimu3g00244 174 SUPERFAMILY SET domain 11 118 IPR046341 -
Vimu3g00244 174 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 22 164 - -
Vimu3g00244 174 Gene3D set domain protein methyltransferase, domain 1 2 114 - -
Vimu3g00244 174 Pfam SET domain 41 100 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00244 Vimu-Chr3 2113391 2114083 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu3g00244 SET 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00244 - - gmx:100813630 278.485