Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00242 ATGGGCAACAACTGCGTGGGACCGAACGTCGGTAACGGCTTCCTCCAGTCCGTTTCGGCGGCGGTGTGGAAAACGCGCCCGCCGGAGTCCCGCCTTCCGGCTCCTTCCGCCGAGAGCAAAACCTCGACTCCGGAACCGAACGCCCAGAAAGCCTCGGAACCCGCACCTTCAAAACCAGCGGATCCTCCGAGCCGGGTGCAGAACACGCCGCCCGAGCCGGTCAAAATGCCCCAGCCCCTGGACCACGAGAAGCCCGCGTCGAGCCACACCGAGTCGACTTCCGGTGACAAGGCTAAGAAACCCACGCACGTGAAACGGTTGTCCAGTATGGGACTACAAGTCGACTCCGTGCTGGGTCGAAAAACAGAGAACATGAAGGAGTTCTTCAGCTTGGGGAGGAAGCTGGGGCAGGGGCAATTCGGGACGACGTTTCTGTGCGTGCAAAAGGGGACGAACAAGGACTTCGCGTGCAAGTCCATCGCGAAGCGGAAGTTGACGACGCAAGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATCATGCACCACTTGGCGGGGCACCCCAACGTGGTTCAGATCGTTGGGGCATACGAGGACGCCGTTGCGGTGCACCTCGTGATGGAGCTCTGCGCTGGAGGAGAGCTCTTTGATAGGATCATACAGAGGGGGCATTACACCGAGAAGAAGGCCGCAGAACTTGCTAGGTTGATTGTTAGTGTGGTGGAGGCTTGTCACTCTCTTGGGGTCATGCACAGGGATTTGAAGCCCGAGAATTTTTTGTTCATGAATCATCAGGAAGAGTCTCCCCTTAAGACCATTGATTTTGGACTCTCCGTGTTCTTTAGACCAGGTGAAACATTCACTGATGTGGTTGGGAGCCCGTACTATGTGGCCCCTGAAGTTTTGCGGAAGAACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATCTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGATGAAACGGAACAGGGAATATTTGAGCAAGTTTTGAAAGGAGAGCTTGACTTTGTTTCTGAACCCTGGCCAAGCATATCCGAAAGCGCAAAGGATCTTGTTCGAAGGATGCTTGTAAGGGACCCTAAAAAGCGGCTGACAGCACATGAAGTTCTTTGCCATCCATGGGTGCAAGTCGGAGGCGTTGCTCCTGATAAGCCACTTGACTCTGCTGTCTTGAGTCGTTTGAAGCAGTTCTCTGCAATGAATAAGCTCAAAAAAATAGCCATTCGAGTAATTGCCGAAAGTTTGTCTGAGGAAGAAATTGCAGGACTGAAAGAAATGTTCAGGATGATAGATACCGATAATAGCGGACAAATCACGCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCTGTTCTTAAGGATTCTGAAATTGCTTGGTTAATGCAAGCGGCAGACGTTGATAACAGTGGTACCATAGACTACGGTGAATTCATTGCAGCTATGGTACACCTAAACAAGATCCAGAAGGAAGATCATCTATATGCAGCATTCACATACTTTGACAAAGATGGGAGTGGATACATTACACAGGATGAGCTCCAACAAGCCTGCGAACAGTTTGGCTTGCAGGATTATCACCTGGATGAGATAATACGTGAAATTGACCAGGATAATGATGGACGCATTGATTATAGTGAGTTTGTTGCCATGATGCAAGACACTGGATTTGGCAAAAAGTGA 1722 0.5052 MGNNCVGPNVGNGFLQSVSAAVWKTRPPESRLPAPSAESKTSTPEPNAQKASEPAPSKPADPPSRVQNTPPEPVKMPQPLDHEKPASSHTESTSGDKAKKPTHVKRLSSMGLQVDSVLGRKTENMKEFFSLGRKLGQGQFGTTFLCVQKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVVQIVGAYEDAVAVHLVMELCAGGELFDRIIQRGHYTEKKAAELARLIVSVVEACHSLGVMHRDLKPENFLFMNHQEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKNYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLVRDPKKRLTAHEVLCHPWVQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAESLSEEEIAGLKEMFRMIDTDNSGQITLEELKNGLERVGSVLKDSEIAWLMQAADVDNSGTIDYGEFIAAMVHLNKIQKEDHLYAAFTYFDKDGSGYITQDELQQACEQFGLQDYHLDEIIREIDQDNDGRIDYSEFVAMMQDTGFGKK 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00242 573 MobiDBLite consensus disorder prediction 35 50 - -
Vimu3g00242 573 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Vimu3g00242 573 MobiDBLite consensus disorder prediction 25 108 - -
Vimu3g00242 573 ProSiteProfiles EF-hand calcium-binding domain profile. 540 571 IPR002048 GO:0005509
Vimu3g00242 573 ProSitePatterns EF-hand calcium-binding domain. 515 527 IPR018247 -
Vimu3g00242 573 ProSiteProfiles Protein kinase domain profile. 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00242 573 FunFam Calcium-dependent protein kinase 1 131 214 - -
Vimu3g00242 573 ProSitePatterns EF-hand calcium-binding domain. 549 561 IPR018247 -
Vimu3g00242 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vimu3g00242 573 ProSiteProfiles EF-hand calcium-binding domain profile. 502 537 IPR002048 GO:0005509
Vimu3g00242 573 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Vimu3g00242 573 Pfam Protein kinase domain 130 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00242 573 SUPERFAMILY EF-hand 427 566 IPR011992 -
Vimu3g00242 573 Gene3D - 413 565 - -
Vimu3g00242 573 SUPERFAMILY Protein kinase-like (PK-like) 129 388 IPR011009 -
Vimu3g00242 573 MobiDBLite consensus disorder prediction 77 103 - -
Vimu3g00242 573 Gene3D Transferase(Phosphotransferase) domain 1 215 391 - -
Vimu3g00242 573 MobiDBLite consensus disorder prediction 56 76 - -
Vimu3g00242 573 FunFam Calcium-dependent protein kinase SK5 215 399 - -
Vimu3g00242 573 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Vimu3g00242 573 FunFam Calcium-dependent protein kinase 1 395 569 - -
Vimu3g00242 573 SMART efh_1 470 498 IPR002048 GO:0005509
Vimu3g00242 573 SMART efh_1 434 462 IPR002048 GO:0005509
Vimu3g00242 573 SMART efh_1 540 568 IPR002048 GO:0005509
Vimu3g00242 573 SMART efh_1 506 534 IPR002048 GO:0005509
Vimu3g00242 573 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 561 - -
Vimu3g00242 573 SMART serkin_6 129 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00242 573 CDD STKc_CAMK 128 386 - -
Vimu3g00242 573 ProSitePatterns Protein kinases ATP-binding region signature. 135 162 IPR017441 GO:0005524
Vimu3g00242 573 Gene3D - 403 496 - -
Vimu3g00242 573 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Vimu3g00242 573 Pfam EF-hand domain pair 435 495 IPR002048 GO:0005509
Vimu3g00242 573 Pfam EF-hand domain pair 505 566 IPR002048 GO:0005509
Vimu3g00242 573 Gene3D Phosphorylase Kinase; domain 1 131 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00242 Vimu-Chr3 2105948 2111052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00242 1 572 EF-hand Containing Proteins AT2G38910 76.603 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g00242 Pkinase 2.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00242 K13412 - gmx:100813232 1009.98