Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00225 ATGGGAAACAACTGTGTTGGATCGAGAACCTCTACTTCTAGTTCATACTGGTGGTGTCGTGGACAAAAGAAAGATTCTTCTCAAGCACAGAAAGGTGGCAAAAAGAACAAAAAATCCGTAGAAACTGTTCAAGATCAGCCTCCAGAGGTAGTGAAAATTGAGAGTGATGAGGTGAAGCCTCCTCGTCAAGCCGCAGAGACTATACCACCTCCGGAACAAACAAAGGCGCAGCCCCAAAAACCAAAGAGGCCACCCAATGTGAGGAAGCCGGCAAGTGCAGGCCTCAAAGCAGATTCTGTTTTGCTAAGGAAAACCGGCCACCTTAAGGAAAATTACAATTTGGGACCAAAGCTTGGACAAGGCCAGTTCGGAACTACTTTCCTTTGTGTTGAGAAGGCTACTGGGAAAGAGTATGCATGCAAGTCCATATTGAAGAGGAAGCTGGTGACAGAGGAAGATGTGGAGGATGTGAGGAGGGAAATTCAGATAATGCACCACTTGGCAGGTAGTCCTGATGTGATCTCAATCAAGGAGGCTTTTGAGGATGCTGTTTCAGTTCATGTTGTTATGGAGCTGTGTGCTGGGGGTGAGCTCTTTGATAGGATTGTCGAAAGAGGGCATTACACTGAGAGAAAGGCAGCCAAGCTTGCAAGAACAATAGTTGGTGTCATCGAGTCTTGCCACTCTCTTGGAGTCATGCATAGGGATCTTAAGCCTGAGAATTTTCTCTTTGTTAATCAACAAGAAGAATCCCCTCTCAAGGCTATAGACTTTGGACTTTCTGCTTTTTTCAAACCAGGAGAAATTTTCAATGACGTAGTAGGAAGTCCCTATTATGTAGCACCTGAAGTTCTACGCAAGCGTTATGGCCCCGAAGCAGATGTATGGAGTGCTGGTGTCATTATATACATTCTCTTATGTGGGGTGCCTCCATTTTGGGGAGAAACGGAGCAAGAGATATTCGACGCAATTTTGCATAATCAACCCGATTTCTCATCGGATCCATGGCCTTCCGTATCTGCAAGTGCAAAAGACTTGGTCAAGAAGATGCTTGTCAGAGACCCTAGTAAACGGATATCAGCTTTTGACGTTCTTCGTCACCCCTGGATTCAAGTTGATGGAGAAGCTCCTGACAAGCCGCTTGATTCTGCAGTTTTAAGTCGCCTAAAGCAGTTTTATGCAATGAACAAACTCAAGAAAATGGCTCTCAGAGTTATAGCACAGAATCTCTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAGGCGATAGACACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGTTGGACTGAAAAAGTTTGGTGCTAATCTCAATGAATCTGAAATTTACGACCTTATGCAAGCAGCAGATGTTGATAACAGTGGCACAATTGACTACGGAGAATTCATAGCTGCAACATTGCATCTCAACAAGGTTGACAGAGAAGATCATTTAGTTGCAGCTTTTGCTTATTTTGATAAAGATGGAAGTGGCTACATCACCCAAGATGAGCTTCAACAAGCTTGCGAAGAATTTGGCATTGGAGATGTTCGCCTGGAGGAAATGATCCGAGAAGCTGATCAAGATAATGATGGACGAATAGACTACAATGAATTTGTGGCTATGATGCAGAAAGGCAATGCAGATTTGAGTAAGAGGGGACGAAAGGGTAGCACTAGTTTTAGAATATTTAGGGAGGCACTACCGGTGTGTTAA 1731 0.4362 MGNNCVGSRTSTSSSYWWCRGQKKDSSQAQKGGKKNKKSVETVQDQPPEVVKIESDEVKPPRQAAETIPPPEQTKAQPQKPKRPPNVRKPASAGLKADSVLLRKTGHLKENYNLGPKLGQGQFGTTFLCVEKATGKEYACKSILKRKLVTEEDVEDVRREIQIMHHLAGSPDVISIKEAFEDAVSVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIESCHSLGVMHRDLKPENFLFVNQQEESPLKAIDFGLSAFFKPGEIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLCGVPPFWGETEQEIFDAILHNQPDFSSDPWPSVSASAKDLVKKMLVRDPSKRISAFDVLRHPWIQVDGEAPDKPLDSAVLSRLKQFYAMNKLKKMALRVIAQNLSEEEIAGLKEMFKAIDTDNSGQITFEELKVGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFAYFDKDGSGYITQDELQQACEEFGIGDVRLEEMIREADQDNDGRIDYNEFVAMMQKGNADLSKRGRKGSTSFRIFREALPVC 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00225 576 FunFam Calcium-dependent protein kinase SK5 198 382 - -
Vimu3g00225 576 SMART serkin_6 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00225 576 MobiDBLite consensus disorder prediction 1 98 - -
Vimu3g00225 576 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Vimu3g00225 576 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Vimu3g00225 576 CDD EFh 489 549 IPR002048 GO:0005509
Vimu3g00225 576 Gene3D - 395 554 - -
Vimu3g00225 576 Gene3D Phosphorylase Kinase; domain 1 115 197 - -
Vimu3g00225 576 FunFam Calcium-dependent protein kinase 1 378 552 - -
Vimu3g00225 576 ProSitePatterns Protein kinases ATP-binding region signature. 118 145 IPR017441 GO:0005524
Vimu3g00225 576 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g00225 576 ProSiteProfiles Protein kinase domain profile. 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00225 576 ProSiteProfiles EF-hand calcium-binding domain profile. 523 554 IPR002048 GO:0005509
Vimu3g00225 576 MobiDBLite consensus disorder prediction 27 42 - -
Vimu3g00225 576 Pfam EF-hand domain pair 490 549 IPR002048 GO:0005509
Vimu3g00225 576 CDD STKc_CAMK 111 369 - -
Vimu3g00225 576 PANTHER SERINE/THREONINE-PROTEIN KINASE 102 544 - -
Vimu3g00225 576 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Vimu3g00225 576 SMART efh_1 523 551 IPR002048 GO:0005509
Vimu3g00225 576 SMART efh_1 417 445 IPR002048 GO:0005509
Vimu3g00225 576 SMART efh_1 489 517 IPR002048 GO:0005509
Vimu3g00225 576 SMART efh_1 453 481 IPR002048 GO:0005509
Vimu3g00225 576 Gene3D Transferase(Phosphotransferase) domain 1 198 394 - -
Vimu3g00225 576 CDD EFh 418 477 IPR002048 GO:0005509
Vimu3g00225 576 FunFam Calcium-dependent protein kinase 1 114 197 - -
Vimu3g00225 576 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Vimu3g00225 576 SUPERFAMILY Protein kinase-like (PK-like) 110 371 IPR011009 -
Vimu3g00225 576 ProSitePatterns EF-hand calcium-binding domain. 532 544 IPR018247 -
Vimu3g00225 576 Pfam EF-hand domain pair 431 480 IPR002048 GO:0005509
Vimu3g00225 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Vimu3g00225 576 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Vimu3g00225 576 SUPERFAMILY EF-hand 409 550 IPR011992 -
Vimu3g00225 576 Pfam Protein kinase domain 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g00225 576 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00225 Vimu-Chr3 1947900 1951106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00225 1 552 EF-hand Containing Proteins AT3G10660 63.911 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g00225 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00225 K13412 - gmx:100783079 1016.14